None
The library imports relevant to this notebook are aready taken care of by importing PTT.
NOTE: This notebook assumes that the pipeline version to be tested is already installed and its environment is activated.
To be able to run this notebook you need to install nptt.
If all goes well you will be able to import PTT.
# Create a temporary directory to hold notebook output, and change the working directory to that directory.
import shutil
import os
from tempfile import TemporaryDirectory
use_tempdir = True
if use_tempdir:
# Create temporary directory
data_dir = TemporaryDirectory()
# Save original directory
orig_dir = os.getcwd()
# Move to new directory
os.chdir(data_dir.name)
# For info, print out where the script is running
print("Running in {}".format(os.getcwd()))
Running in /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/tmpc4g9b_04
import os
if 'CRDS_CACHE_TYPE' in os.environ:
if os.environ['CRDS_CACHE_TYPE'] == 'local':
os.environ['CRDS_PATH'] = os.path.join(os.environ['HOME'], 'crds', 'cache')
elif os.path.isdir(os.environ['CRDS_CACHE_TYPE']):
os.environ['CRDS_PATH'] = os.environ['CRDS_CACHE_TYPE']
print('CRDS cache location: {}'.format(os.environ['CRDS_PATH']))
CRDS cache location: /grp/crds/cache
import warnings
import psutil
from astropy.io import fits
# Only print a DeprecationWarning the first time it shows up, not every time.
with warnings.catch_warnings():
warnings.simplefilter("once", category=DeprecationWarning)
import jwst
from jwst.pipeline.calwebb_detector1 import Detector1Pipeline
from jwst.pipeline.calwebb_spec2 import Spec2Pipeline
from jwst.assign_wcs.assign_wcs_step import AssignWcsStep
from jwst.msaflagopen.msaflagopen_step import MSAFlagOpenStep
from jwst.extract_2d.extract_2d_step import Extract2dStep
from jwst.srctype.srctype_step import SourceTypeStep
from jwst.wavecorr.wavecorr_step import WavecorrStep
from jwst.flatfield.flat_field_step import FlatFieldStep
# The latest version of NPTT is installed in the requirements text file at:
# /jwst_validation_notebooks/environment.yml
# import NPTT
import nirspec_pipe_testing_tool as nptt
# To get data from Artifactory
from ci_watson.artifactory_helpers import get_bigdata
# Print versions used for the pipeline and NPTT
pipeline_version = jwst.__version__
nptt_version = nptt.__version__
print("Using jwst pipeline version: ", pipeline_version)
print("Using NPTT version: ", nptt_version)
Using jwst pipeline version: 1.8.2 Using NPTT version: 2.0.1
The test is a direct comparison of the result of our implementation of the flat field step algorithm versus the pipeline's implementation, i.e.: difference = absolute( Flat_nirspec_implementation - Flat_pipeline)
We expect the absolute difference to be of the order of 1x10^-6. We set this threshold by assuming that the difference should yield computer precision 1x10^-7 numbers. We then relaxed one order of magnitude due to interpolation differences in the algorithms.
For the test to be considered PASSED, every single slit (for FS data), slitlet (for MOS data) or slice (for IFU data) in the input file has to pass. If there is any failure, the whole test will be considered as FAILED.
The code for this test for Fixed Slits (FS) can be obtained from: https://github.com/spacetelescope/nirspec_pipe_testing_tool/blob/master/nirspec_pipe_testing_tool/calwebb_spec2_pytests/auxiliary_code/flattest_fs.py. For Multi Object Spectroscopy (MOS), the code is in the same repository but is named flattest_mos.py, and for Integral Field Unit (IFU) data, the test is named flattest_ifu.py.
The input file is defined in the variable input_file (see section Testing Data Set and Variable Setup).
Step description: https://jwst-pipeline.readthedocs.io/en/latest/jwst/flatfield/main.html
Pipeline code: https://github.com/spacetelescope/jwst/tree/master/jwst/flatfield
If the test PASSED this means that all slits, slitlets, or slices individually passed the test. However, if ony one individual slit (for FS data), slitlet (for MOS data) or slice (for IFU data) test failed, the whole test will be reported as FAILED.
A short description and link to the page: https://outerspace.stsci.edu/display/JWSTCC/Vanilla+Spectral+Flat+Field+Correction
Acronymns used un this notebook:
pipeline: calibration pipeline
spec2: spectroscopic calibration pipeline level 2b
PTT: NIRSpec pipeline testing tool (https://github.com/spacetelescope/nirspec_pipe_testing_tool)
The pipeline can be run from the command line in two variants: full or per step.
Tu run the spec2 pipeline in full use the command:
$ strun jwst.pipeline.Spec2Pipeline jwtest_rate.fits
Tu only run the flat_field step, use the command:
$ strun jwst.flat_field.FlatFieldStep jwtest_extract_2d.fits
These options are also callable from a script with the testing environment active. The Python call for running the pipeline in full or by step are:
$\gt$ from jwst.pipeline.calwebb_spec2 import Spec2Pipeline
$\gt$ Spec2Pipeline.call(jwtest_rate.fits)
or
$\gt$ from jwst.flat_field.flat_field_step import FlatFieldStep
$\gt$ FlatFieldStep.call(jwtest_extract_2d.fits)
For the imaging pipeline the call would be as follows:
$\gt$ from jwst.pipeline.calwebb_image2 import Image2Pipeline
$\gt$ Image2Pipeline.call(jwtest_rate.fits)
NPTT can run the spec2 pipeline either in full or per step, as well as the imaging pipeline in full. In this notebook we will use NPTT to run the pipeline and the validation tests. To run NPTT, follow the directions in the corresponding repo page.
-> For each mode, the following variables will need to be set:
All testing data is from the CV3 campaign. We chose these files because this is our most complete data set, i.e. all modes and filter-grating combinations.
Data used was for testing:
testing_data = {
'mos_g140m_f100lp':{
'uncal_file_nrs1': 'mos_g140m_line1_NRS1_uncal.fits',
'uncal_file_nrs2': 'mos_g140m_line1_NRS2_uncal.fits',
'sflat_nrs1': 'nirspec_MOS_sflat_G140M_OPAQUE_FLAT1_nrs1_f_01.01.fits',
'sflat_nrs2': 'nirspec_MOS_sflat_G140M_OPAQUE_FLAT1_nrs2_f_01.01.fits',
'fflat': 'nirspec_MOS_fflat_F100LP_01.01.fits',
'msa_shutter_config': 'V8460001000101_msa.fits' }
}
# define function to pull data from Artifactory
def get_artifactory_file(data_set_dict, detector):
"""This function creates a list with all the files needed per detector to run the test.
Args:
data_set_dict: dictionary, contains inputs for a specific mode and configuration
detector: string, either nrs1 or nrs2
Returns:
data: list, contains all files needed to run test
"""
files2obtain = ['uncal_file_nrs1', 'sflat_nrs1', 'fflat', 'msa_shutter_config']
data = []
for file in files2obtain:
data_file = None
try:
if '_nrs' in file and '2' in detector:
file = file.replace('_nrs1', '_nrs2')
data_file = get_bigdata('jwst_validation_notebooks',
'validation_data',
'nirspec_data',
data_set_dict[file])
except TypeError:
data.append(None)
continue
data.append(data_file)
return data
# set the D-flat path (used for all test data)
print('Getting D-Flats from Artifactory...')
dflat_nrs1 = get_bigdata('jwst_validation_notebooks',
'validation_data',
'nirspec_data',
'nirspec_dflat_nrs1_f_01.03.fits')
dflat_nrs2 = get_bigdata('jwst_validation_notebooks',
'validation_data',
'nirspec_data',
'nirspec_dflat_nrs2_f_01.03.fits')
print('Got D-flats')
# set NPTT switches for this test and other variables
writefile = False
save_figs = False
show_figs = True
results_dict = {}
detectors = ['nrs1', 'nrs2']
Getting D-Flats from Artifactory... Got D-flats
# Get data for MOS
for mode_config, data_set_dict in testing_data.items():
if 'mos' not in mode_config:
continue
print('Starting to run pipeline and test for mode: ', mode_config)
for detector in detectors:
print('Testing files for detector: ', detector)
data = get_artifactory_file(data_set_dict, detector)
uncal_file, sflat, fflat, msa_shutter_config = data
print('Working with uncal_file: ', uncal_file)
uncal_basename = os.path.basename(uncal_file)
dflat = dflat_nrs1
if '2' in detector:
dflat = dflat_nrs2
# Make sure these keywords are properly set
filt = fits.getval(uncal_file, 'FILTER')
if 'OPAQUE' in filt or 'allslits' in uncal_basename.lower():
if 'clear' in uncal_basename.lower():
filt = 'CLEAR'
else:
l = uncal_basename.split("_")
for li in l:
if 'lp' in li.lower():
filt = li
break
fits.setval(uncal_file, 'FILTER', value=filt)
print('Filter = ', filt)
# Run the stage 1 pipeline
print('Running the detector1 pipeline...')
rate_object = Detector1Pipeline.call(uncal_file)
# Make sure the MSA shutter configuration file is set up correctly
if msa_shutter_config is not None:
msa_metadata = rate_object.meta.instrument.msa_metadata_file
if msa_metadata is None or msa_metadata == 'N/A':
rate_object.meta.instrument.msa_metadata_file = msa_shutter_config
# Make sure the FXD_SLIT keyword is set correctly
try:
if 'full' in rate_object.meta.instrument.fixed_slit:
rate_object.meta.instrument.fixed_slit = 'NONE'
except TypeError:
print('FXD_SLIT keyword = ', rate_object.meta.instrument.fixed_slit)
# Run the stage 2 pipeline steps
print('\nRunning the spec2 pipeline...')
skip_file = False
try:
parameter_dict = {"flat_field": {"save_interpolated_flat": True},
"pathloss": {"skip": True},
"barshadow": {"skip": True},
"photom": {"skip": True},
"resample_spec": {"skip": True},
"cube_build": {"skip": True},
"extract_1d": {"skip": True}
}
flat_field_object = Spec2Pipeline.call(rate_object, steps=parameter_dict)
except:
#print("No open slits fall on detector ", det) # usually why assign_wcs crashes
print("* Spec2 pipeline CRASHED or exited with no output for detector ", detector)
print(" Skipping test for this file. \n")
skip_file = True
if not skip_file:
# accepted threshold difference with respect to benchmark files
threshold_diff = 9.999e-5
if 'prism' in uncal_basename.lower():
threshold_diff = 9.999e-3
# Run the validation test
%matplotlib inline
interpolated_flat = os.path.basename(uncal_file).replace('uncal', 'interpolatedflat')
print('Running flat field test for MOS...')
result, result_msg, log_msgs = nptt.calwebb_spec2_pytests.auxiliary_code.flattest_mos.flattest(
flat_field_object,
dflat_path=dflat,
sflat_path=sflat,
fflat_path=fflat,
msa_shutter_conf=msa_shutter_config,
writefile=writefile,
show_figs=show_figs,
save_figs=save_figs,
interpolated_flat=interpolated_flat,
threshold_diff=threshold_diff,
debug=False)
else:
result, result_msg = 'skipped', 'skipped'
# Did the test passed
print("Did flat_field for ", mode_config, " validation test passed? ", result_msg, "\n\n")
rd = {uncal_basename: result}
results_dict.update(rd)
# close all open files
psutil.Process().open_files()
closing_files = []
for fd in psutil.Process().open_files():
if data_dir.name in fd.path:
closing_files.append(fd)
for fd in closing_files:
try:
print('Closing file: ', fd, '\n\n')
open(fd.fd).close()
except:
print('File already closed: ', fd, '\n\n')
Starting to run pipeline and test for mode: mos_g140m_f100lp Testing files for detector: nrs1 Working with uncal_file: /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/tmpc4g9b_04/mos_g140m_line1_NRS1_uncal.fits Filter = F100LP Running the detector1 pipeline...
2022-12-03 22:58:04,531 - stpipe - INFO - PARS-DETECTOR1PIPELINE parameters found: /grp/crds/cache/references/jwst/jwst_nirspec_pars-detector1pipeline_0004.asdf
2022-12-03 22:58:04,558 - stpipe.Detector1Pipeline - INFO - Detector1Pipeline instance created.
2022-12-03 22:58:04,560 - stpipe.Detector1Pipeline.group_scale - INFO - GroupScaleStep instance created.
2022-12-03 22:58:04,562 - stpipe.Detector1Pipeline.dq_init - INFO - DQInitStep instance created.
2022-12-03 22:58:04,563 - stpipe.Detector1Pipeline.saturation - INFO - SaturationStep instance created.
2022-12-03 22:58:04,564 - stpipe.Detector1Pipeline.ipc - INFO - IPCStep instance created.
2022-12-03 22:58:04,566 - stpipe.Detector1Pipeline.superbias - INFO - SuperBiasStep instance created.
2022-12-03 22:58:04,568 - stpipe.Detector1Pipeline.refpix - INFO - RefPixStep instance created.
2022-12-03 22:58:04,569 - stpipe.Detector1Pipeline.rscd - INFO - RscdStep instance created.
2022-12-03 22:58:04,570 - stpipe.Detector1Pipeline.firstframe - INFO - FirstFrameStep instance created.
2022-12-03 22:58:04,571 - stpipe.Detector1Pipeline.lastframe - INFO - LastFrameStep instance created.
2022-12-03 22:58:04,573 - stpipe.Detector1Pipeline.linearity - INFO - LinearityStep instance created.
2022-12-03 22:58:04,574 - stpipe.Detector1Pipeline.dark_current - INFO - DarkCurrentStep instance created.
2022-12-03 22:58:04,576 - stpipe.Detector1Pipeline.reset - INFO - ResetStep instance created.
2022-12-03 22:58:04,577 - stpipe.Detector1Pipeline.persistence - INFO - PersistenceStep instance created.
2022-12-03 22:58:04,580 - stpipe.Detector1Pipeline.jump - INFO - JumpStep instance created.
2022-12-03 22:58:04,582 - stpipe.Detector1Pipeline.ramp_fit - INFO - RampFitStep instance created.
2022-12-03 22:58:04,584 - stpipe.Detector1Pipeline.gain_scale - INFO - GainScaleStep instance created.
2022-12-03 22:58:04,821 - stpipe.Detector1Pipeline - INFO - Step Detector1Pipeline running with args ('/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/tmpc4g9b_04/mos_g140m_line1_NRS1_uncal.fits',).
2022-12-03 22:58:04,831 - stpipe.Detector1Pipeline - INFO - Step Detector1Pipeline parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'save_calibrated_ramp': False, 'steps': {'group_scale': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': ''}, 'dq_init': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': ''}, 'saturation': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'n_pix_grow_sat': 1}, 'ipc': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': ''}, 'superbias': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': ''}, 'refpix': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'odd_even_columns': True, 'use_side_ref_pixels': True, 'side_smoothing_length': 11, 'side_gain': 1.0, 'odd_even_rows': True}, 'rscd': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'type': 'baseline'}, 'firstframe': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': ''}, 'lastframe': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': ''}, 'linearity': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': ''}, 'dark_current': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'dark_output': None}, 'reset': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': ''}, 'persistence': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'input_trapsfilled': '', 'flag_pers_cutoff': 40.0, 'save_persistence': False, 'save_trapsfilled': True}, 'jump': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'rejection_threshold': 4.0, 'three_group_rejection_threshold': 6.0, 'four_group_rejection_threshold': 5.0, 'maximum_cores': 'none', 'flag_4_neighbors': True, 'max_jump_to_flag_neighbors': 1000.0, 'min_jump_to_flag_neighbors': 10.0, 'after_jump_flag_dn1': 0.0, 'after_jump_flag_time1': 0.0, 'after_jump_flag_dn2': 0.0, 'after_jump_flag_time2': 0.0, 'min_sat_area': 1.0, 'min_jump_area': 5.0, 'expand_factor': 2.0, 'use_ellipses': False, 'sat_required_snowball': True, 'expand_large_events': False}, 'ramp_fit': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'int_name': '', 'save_opt': False, 'opt_name': '', 'suppress_one_group': True, 'maximum_cores': 'none'}, 'gain_scale': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': ''}}}
2022-12-03 22:58:05,022 - stpipe.Detector1Pipeline - INFO - Prefetching reference files for dataset: 'mos_g140m_line1_NRS1_uncal.fits' reftypes = ['dark', 'gain', 'linearity', 'mask', 'persat', 'readnoise', 'refpix', 'reset', 'rscd', 'saturation', 'superbias', 'trapdensity', 'trappars']
2022-12-03 22:58:05,048 - stpipe.Detector1Pipeline - INFO - Prefetch for DARK reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_dark_0140.fits'.
2022-12-03 22:58:05,050 - stpipe.Detector1Pipeline - INFO - Prefetch for GAIN reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_gain_0019.fits'.
2022-12-03 22:58:05,051 - stpipe.Detector1Pipeline - INFO - Prefetch for LINEARITY reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_linearity_0019.fits'.
2022-12-03 22:58:05,054 - stpipe.Detector1Pipeline - INFO - Prefetch for MASK reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_mask_0024.fits'.
2022-12-03 22:58:05,055 - stpipe.Detector1Pipeline - INFO - Prefetch for PERSAT reference file is 'N/A'.
2022-12-03 22:58:05,056 - stpipe.Detector1Pipeline - INFO - Prefetch for READNOISE reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_readnoise_0019.fits'.
2022-12-03 22:58:05,057 - stpipe.Detector1Pipeline - INFO - Prefetch for REFPIX reference file is 'N/A'.
2022-12-03 22:58:05,058 - stpipe.Detector1Pipeline - INFO - Prefetch for RESET reference file is 'N/A'.
2022-12-03 22:58:05,058 - stpipe.Detector1Pipeline - INFO - Prefetch for RSCD reference file is 'N/A'.
2022-12-03 22:58:05,058 - stpipe.Detector1Pipeline - INFO - Prefetch for SATURATION reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_saturation_0023.fits'.
2022-12-03 22:58:05,060 - stpipe.Detector1Pipeline - INFO - Prefetch for SUPERBIAS reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_superbias_0087.fits'.
2022-12-03 22:58:05,062 - stpipe.Detector1Pipeline - INFO - Prefetch for TRAPDENSITY reference file is 'N/A'.
2022-12-03 22:58:05,063 - stpipe.Detector1Pipeline - INFO - Prefetch for TRAPPARS reference file is 'N/A'.
2022-12-03 22:58:05,063 - stpipe.Detector1Pipeline - INFO - Starting calwebb_detector1 ...
2022-12-03 22:58:05,576 - stpipe.Detector1Pipeline.group_scale - INFO - Step group_scale running with args (<RampModel(1, 6, 2048, 2048) from mos_g140m_line1_NRS1_uncal.fits>,).
2022-12-03 22:58:05,578 - stpipe.Detector1Pipeline.group_scale - INFO - Step group_scale parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/tmpc4g9b_04'}
2022-12-03 22:58:05,714 - stpipe.Detector1Pipeline.group_scale - INFO - NFRAMES and FRMDIVSR are equal; correction not needed
2022-12-03 22:58:05,715 - stpipe.Detector1Pipeline.group_scale - INFO - Step will be skipped
2022-12-03 22:58:05,718 - stpipe.Detector1Pipeline.group_scale - INFO - Step group_scale done
2022-12-03 22:58:05,965 - stpipe.Detector1Pipeline.dq_init - INFO - Step dq_init running with args (<RampModel(1, 6, 2048, 2048) from mos_g140m_line1_NRS1_uncal.fits>,).
2022-12-03 22:58:05,967 - stpipe.Detector1Pipeline.dq_init - INFO - Step dq_init parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/tmpc4g9b_04'}
2022-12-03 22:58:05,994 - stpipe.Detector1Pipeline.dq_init - INFO - Using MASK reference file /grp/crds/cache/references/jwst/jwst_nirspec_mask_0024.fits
2022-12-03 22:58:06,993 - stpipe.Detector1Pipeline.dq_init - INFO - Step dq_init done
2022-12-03 22:58:07,237 - stpipe.Detector1Pipeline.saturation - INFO - Step saturation running with args (<RampModel(1, 6, 2048, 2048) from mos_g140m_line1_NRS1_uncal.fits>,).
2022-12-03 22:58:07,239 - stpipe.Detector1Pipeline.saturation - INFO - Step saturation parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/tmpc4g9b_04', 'n_pix_grow_sat': 1}
2022-12-03 22:58:07,264 - stpipe.Detector1Pipeline.saturation - INFO - Using SATURATION reference file /grp/crds/cache/references/jwst/jwst_nirspec_saturation_0023.fits
2022-12-03 22:58:10,614 - stpipe.Detector1Pipeline.saturation - INFO - Detected 108240 saturated pixels
2022-12-03 22:58:10,641 - stpipe.Detector1Pipeline.saturation - INFO - Detected 0 A/D floor pixels
2022-12-03 22:58:10,655 - stpipe.Detector1Pipeline.saturation - INFO - Step saturation done
2022-12-03 22:58:10,906 - stpipe.Detector1Pipeline.ipc - INFO - Step ipc running with args (<RampModel(1, 6, 2048, 2048) from mos_g140m_line1_NRS1_uncal.fits>,).
2022-12-03 22:58:10,908 - stpipe.Detector1Pipeline.ipc - INFO - Step ipc parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/tmpc4g9b_04'}
2022-12-03 22:58:10,908 - stpipe.Detector1Pipeline.ipc - INFO - Step skipped.
2022-12-03 22:58:10,912 - stpipe.Detector1Pipeline.ipc - INFO - Step ipc done
2022-12-03 22:58:11,150 - stpipe.Detector1Pipeline.superbias - INFO - Step superbias running with args (<RampModel(1, 6, 2048, 2048) from mos_g140m_line1_NRS1_uncal.fits>,).
2022-12-03 22:58:11,152 - stpipe.Detector1Pipeline.superbias - INFO - Step superbias parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/tmpc4g9b_04'}
2022-12-03 22:58:11,178 - stpipe.Detector1Pipeline.superbias - INFO - Using SUPERBIAS reference file /grp/crds/cache/references/jwst/jwst_nirspec_superbias_0087.fits
2022-12-03 22:58:15,096 - stpipe.Detector1Pipeline.superbias - INFO - Step superbias done
2022-12-03 22:58:15,344 - stpipe.Detector1Pipeline.refpix - INFO - Step refpix running with args (<RampModel(1, 6, 2048, 2048) from mos_g140m_line1_NRS1_uncal.fits>,).
2022-12-03 22:58:15,346 - stpipe.Detector1Pipeline.refpix - INFO - Step refpix parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/tmpc4g9b_04', 'odd_even_columns': True, 'use_side_ref_pixels': True, 'side_smoothing_length': 11, 'side_gain': 1.0, 'odd_even_rows': True}
2022-12-03 22:58:15,473 - stpipe.Detector1Pipeline.refpix - INFO - NIR full frame data
2022-12-03 22:58:15,475 - stpipe.Detector1Pipeline.refpix - INFO - The following parameters are valid for this mode:
2022-12-03 22:58:15,475 - stpipe.Detector1Pipeline.refpix - INFO - use_side_ref_pixels = True
2022-12-03 22:58:15,476 - stpipe.Detector1Pipeline.refpix - INFO - odd_even_columns = True
2022-12-03 22:58:15,476 - stpipe.Detector1Pipeline.refpix - INFO - side_smoothing_length = 11
2022-12-03 22:58:15,477 - stpipe.Detector1Pipeline.refpix - INFO - side_gain = 1.0
2022-12-03 22:58:15,477 - stpipe.Detector1Pipeline.refpix - INFO - The following parameter is not applicable and is ignored:
2022-12-03 22:58:15,478 - stpipe.Detector1Pipeline.refpix - INFO - odd_even_rows = False
2022-12-03 22:58:18,586 - stpipe.Detector1Pipeline.refpix - INFO - Step refpix done
2022-12-03 22:58:18,736 - stpipe.Detector1Pipeline.linearity - INFO - Step linearity running with args (<RampModel(1, 6, 2048, 2048) from mos_g140m_line1_NRS1_uncal.fits>,).
2022-12-03 22:58:18,737 - stpipe.Detector1Pipeline.linearity - INFO - Step linearity parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/tmpc4g9b_04'}
2022-12-03 22:58:18,781 - stpipe.Detector1Pipeline.linearity - INFO - Using Linearity reference file /grp/crds/cache/references/jwst/jwst_nirspec_linearity_0019.fits
2022-12-03 22:58:26,990 - stpipe.Detector1Pipeline.linearity - INFO - Step linearity done
2022-12-03 22:58:27,108 - stpipe.Detector1Pipeline.dark_current - INFO - Step dark_current running with args (<RampModel(1, 6, 2048, 2048) from mos_g140m_line1_NRS1_uncal.fits>,).
2022-12-03 22:58:27,109 - stpipe.Detector1Pipeline.dark_current - INFO - Step dark_current parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/tmpc4g9b_04', 'dark_output': None}
2022-12-03 22:58:27,134 - stpipe.Detector1Pipeline.dark_current - INFO - Using DARK reference file /grp/crds/cache/references/jwst/jwst_nirspec_dark_0140.fits
2022-12-03 22:58:33,427 - stpipe.Detector1Pipeline.dark_current - INFO - Science data nints=1, ngroups=6, nframes=1, groupgap=0
2022-12-03 22:58:33,428 - stpipe.Detector1Pipeline.dark_current - INFO - Dark data nints=1, ngroups=10, nframes=1, groupgap=0
2022-12-03 22:58:33,717 - stpipe.Detector1Pipeline.dark_current - INFO - Step dark_current done
2022-12-03 22:58:33,833 - stpipe.Detector1Pipeline.jump - INFO - Step jump running with args (<RampModel(1, 6, 2048, 2048) from mos_g140m_line1_NRS1_uncal.fits>,).
2022-12-03 22:58:33,835 - stpipe.Detector1Pipeline.jump - INFO - Step jump parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/tmpc4g9b_04', 'rejection_threshold': 4.0, 'three_group_rejection_threshold': 6.0, 'four_group_rejection_threshold': 5.0, 'maximum_cores': 'none', 'flag_4_neighbors': True, 'max_jump_to_flag_neighbors': 1000.0, 'min_jump_to_flag_neighbors': 10.0, 'after_jump_flag_dn1': 0.0, 'after_jump_flag_time1': 0.0, 'after_jump_flag_dn2': 0.0, 'after_jump_flag_time2': 0.0, 'min_sat_area': 1.0, 'min_jump_area': 5.0, 'expand_factor': 2.0, 'use_ellipses': False, 'sat_required_snowball': True, 'expand_large_events': False}
2022-12-03 22:58:33,845 - stpipe.Detector1Pipeline.jump - INFO - CR rejection threshold = 4 sigma
2022-12-03 22:58:33,865 - stpipe.Detector1Pipeline.jump - INFO - Using GAIN reference file: /grp/crds/cache/references/jwst/jwst_nirspec_gain_0019.fits
2022-12-03 22:58:33,944 - stpipe.Detector1Pipeline.jump - INFO - Using READNOISE reference file: /grp/crds/cache/references/jwst/jwst_nirspec_readnoise_0019.fits
2022-12-03 22:58:35,912 - stpipe.Detector1Pipeline.jump - INFO - Executing two-point difference method
2022-12-03 22:58:35,978 - stpipe.Detector1Pipeline.jump - INFO - Working on integration 1:
/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/stcal/jump/twopoint_difference.py:154: RuntimeWarning: All-NaN slice encountered
max_ratio = np.nanmax(ratio, axis=0)
2022-12-03 22:58:38,202 - stpipe.Detector1Pipeline.jump - INFO - From highest outlier, two-point found 41569 pixels with at least one CR from five or more groups.
2022-12-03 22:58:44,934 - stpipe.Detector1Pipeline.jump - INFO - Total elapsed time = 9.02095 sec
/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/stcal/jump/jump.py:302: RuntimeWarning: invalid value encountered in divide
data /= gain_2d
/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/stcal/jump/jump.py:303: RuntimeWarning: invalid value encountered in divide
err /= gain_2d
/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/stcal/jump/jump.py:304: RuntimeWarning: invalid value encountered in divide
readnoise_2d /= gain_2d
2022-12-03 22:58:45,044 - stpipe.Detector1Pipeline.jump - INFO - The execution time in seconds: 11.199386
2022-12-03 22:58:45,050 - stpipe.Detector1Pipeline.jump - INFO - Step jump done
2022-12-03 22:58:45,164 - stpipe.Detector1Pipeline.ramp_fit - INFO - Step ramp_fit running with args (<RampModel(1, 6, 2048, 2048) from mos_g140m_line1_NRS1_uncal.fits>,).
2022-12-03 22:58:45,166 - stpipe.Detector1Pipeline.ramp_fit - INFO - Step ramp_fit parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/tmpc4g9b_04', 'int_name': '', 'save_opt': False, 'opt_name': '', 'suppress_one_group': True, 'maximum_cores': 'none'}
2022-12-03 22:58:45,204 - stpipe.Detector1Pipeline.ramp_fit - INFO - Using READNOISE reference file: /grp/crds/cache/references/jwst/jwst_nirspec_readnoise_0019.fits
2022-12-03 22:58:45,205 - stpipe.Detector1Pipeline.ramp_fit - INFO - Using GAIN reference file: /grp/crds/cache/references/jwst/jwst_nirspec_gain_0019.fits
2022-12-03 22:58:45,326 - stpipe.Detector1Pipeline.ramp_fit - INFO - Using algorithm = ols
2022-12-03 22:58:45,326 - stpipe.Detector1Pipeline.ramp_fit - INFO - Using weighting = optimal
/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/stcal/ramp_fitting/ols_fit.py:1089: RuntimeWarning: invalid value encountered in multiply
var_p4[num_int, :, :, :] *= (segs_4[num_int, :, :, :] > 0)
2022-12-03 22:59:10,853 - stpipe.Detector1Pipeline.ramp_fit - INFO - Number of groups per integration: 6
2022-12-03 22:59:10,854 - stpipe.Detector1Pipeline.ramp_fit - INFO - Number of integrations: 1
2022-12-03 22:59:11,027 - stpipe.Detector1Pipeline.ramp_fit - INFO - Step ramp_fit done
2022-12-03 22:59:11,163 - stpipe.Detector1Pipeline.gain_scale - INFO - Step gain_scale running with args (<ImageModel(2048, 2048) from mos_g140m_line1_NRS1_uncal.fits>,).
2022-12-03 22:59:11,165 - stpipe.Detector1Pipeline.gain_scale - INFO - Step gain_scale parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': 'gain_scale', 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/tmpc4g9b_04'}
2022-12-03 22:59:11,236 - stpipe.Detector1Pipeline.gain_scale - INFO - GAINFACT not found in gain reference file
2022-12-03 22:59:11,237 - stpipe.Detector1Pipeline.gain_scale - INFO - Step will be skipped
2022-12-03 22:59:11,241 - stpipe.Detector1Pipeline.gain_scale - INFO - Step gain_scale done
2022-12-03 22:59:11,343 - stpipe.Detector1Pipeline.gain_scale - INFO - Step gain_scale running with args (<CubeModel(1, 2048, 2048) from mos_g140m_line1_NRS1_uncal.fits>,).
2022-12-03 22:59:11,345 - stpipe.Detector1Pipeline.gain_scale - INFO - Step gain_scale parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': 'gain_scaleints', 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/tmpc4g9b_04'}
2022-12-03 22:59:11,418 - stpipe.Detector1Pipeline.gain_scale - INFO - GAINFACT not found in gain reference file
2022-12-03 22:59:11,419 - stpipe.Detector1Pipeline.gain_scale - INFO - Step will be skipped
2022-12-03 22:59:11,423 - stpipe.Detector1Pipeline.gain_scale - INFO - Step gain_scale done
2022-12-03 22:59:11,424 - stpipe.Detector1Pipeline - INFO - ... ending calwebb_detector1
2022-12-03 22:59:11,424 - stpipe.Detector1Pipeline - INFO - Results used CRDS context: jwst_1019.pmap
2022-12-03 22:59:11,424 - stpipe.Detector1Pipeline - INFO - Step Detector1Pipeline done
2022-12-03 22:59:11,450 - CRDS - ERROR - Error determining best reference for 'pars-residualfringestep' = Unknown reference type 'pars-residualfringestep'
2022-12-03 22:59:11,467 - stpipe.Spec2Pipeline - INFO - Spec2Pipeline instance created.
2022-12-03 22:59:11,468 - stpipe.Spec2Pipeline.bkg_subtract - INFO - BackgroundStep instance created.
2022-12-03 22:59:11,470 - stpipe.Spec2Pipeline.assign_wcs - INFO - AssignWcsStep instance created.
2022-12-03 22:59:11,470 - stpipe.Spec2Pipeline.imprint_subtract - INFO - ImprintStep instance created.
2022-12-03 22:59:11,471 - stpipe.Spec2Pipeline.msa_flagging - INFO - MSAFlagOpenStep instance created.
2022-12-03 22:59:11,473 - stpipe.Spec2Pipeline.extract_2d - INFO - Extract2dStep instance created.
2022-12-03 22:59:11,475 - stpipe.Spec2Pipeline.master_background_mos - INFO - MasterBackgroundMosStep instance created.
2022-12-03 22:59:11,476 - stpipe.Spec2Pipeline.master_background_mos.flat_field - INFO - FlatFieldStep instance created.
2022-12-03 22:59:11,477 - stpipe.Spec2Pipeline.master_background_mos.pathloss - INFO - PathLossStep instance created.
2022-12-03 22:59:11,478 - stpipe.Spec2Pipeline.master_background_mos.barshadow - INFO - BarShadowStep instance created.
2022-12-03 22:59:11,479 - stpipe.Spec2Pipeline.master_background_mos.photom - INFO - PhotomStep instance created.
2022-12-03 22:59:11,480 - stpipe.Spec2Pipeline.wavecorr - INFO - WavecorrStep instance created.
2022-12-03 22:59:11,481 - stpipe.Spec2Pipeline.flat_field - INFO - FlatFieldStep instance created.
2022-12-03 22:59:11,482 - stpipe.Spec2Pipeline.srctype - INFO - SourceTypeStep instance created.
2022-12-03 22:59:11,483 - stpipe.Spec2Pipeline.straylight - INFO - StraylightStep instance created.
2022-12-03 22:59:11,484 - stpipe.Spec2Pipeline.fringe - INFO - FringeStep instance created.
2022-12-03 22:59:11,485 - stpipe.Spec2Pipeline.residual_fringe - INFO - ResidualFringeStep instance created.
2022-12-03 22:59:11,486 - stpipe.Spec2Pipeline.pathloss - INFO - PathLossStep instance created.
2022-12-03 22:59:11,487 - stpipe.Spec2Pipeline.barshadow - INFO - BarShadowStep instance created.
2022-12-03 22:59:11,488 - stpipe.Spec2Pipeline.wfss_contam - INFO - WfssContamStep instance created.
2022-12-03 22:59:11,489 - stpipe.Spec2Pipeline.photom - INFO - PhotomStep instance created.
2022-12-03 22:59:11,490 - stpipe.Spec2Pipeline.resample_spec - INFO - ResampleSpecStep instance created.
2022-12-03 22:59:11,492 - stpipe.Spec2Pipeline.cube_build - INFO - CubeBuildStep instance created.
2022-12-03 22:59:11,493 - stpipe.Spec2Pipeline.extract_1d - INFO - Extract1dStep instance created.
2022-12-03 22:59:11,600 - stpipe.Spec2Pipeline - INFO - Step Spec2Pipeline running with args (<ImageModel(2048, 2048) from mos_g140m_line1_NRS1_uncal.fits>,).
2022-12-03 22:59:11,615 - stpipe.Spec2Pipeline - INFO - Step Spec2Pipeline parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'save_bsub': False, 'fail_on_exception': True, 'save_wfss_esec': False, 'steps': {'bkg_subtract': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'save_combined_background': False, 'sigma': 3.0, 'maxiters': None, 'wfss_mmag_extract': None}, 'assign_wcs': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'sip_approx': True, 'sip_max_pix_error': 0.1, 'sip_degree': None, 'sip_max_inv_pix_error': 0.1, 'sip_inv_degree': None, 'sip_npoints': 12, 'slit_y_low': -0.55, 'slit_y_high': 0.55}, 'imprint_subtract': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': ''}, 'msa_flagging': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': ''}, 'extract_2d': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'slit_name': None, 'extract_orders': None, 'grism_objects': None, 'tsgrism_extract_height': None, 'wfss_extract_half_height': 5, 'wfss_mmag_extract': None, 'wfss_nbright': 1000}, 'master_background_mos': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'force_subtract': False, 'save_background': False, 'user_background': None, 'inverse': False, 'steps': {'flat_field': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False}, 'pathloss': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'inverse': False, 'source_type': None}, 'barshadow': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'inverse': False, 'source_type': None}, 'photom': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'inverse': False, 'source_type': None}}}, 'wavecorr': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': ''}, 'flat_field': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'save_interpolated_flat': True, 'user_supplied_flat': None, 'inverse': False}, 'srctype': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'source_type': None}, 'straylight': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': ''}, 'fringe': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': ''}, 'residual_fringe': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': 'residual_fringe', 'search_output_file': False, 'input_dir': '', 'save_intermediate_results': False, 'ignore_region_min': None, 'ignore_region_max': None}, 'pathloss': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'inverse': False, 'source_type': None}, 'barshadow': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'inverse': False, 'source_type': None}, 'wfss_contam': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'save_simulated_image': False, 'save_contam_images': False, 'maximum_cores': 'none'}, 'photom': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'inverse': False, 'source_type': None}, 'resample_spec': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'pixfrac': 1.0, 'kernel': 'square', 'fillval': 'INDEF', 'weight_type': 'ivm', 'output_shape': None, 'crpix': None, 'crval': None, 'rotation': None, 'pixel_scale_ratio': 1.0, 'pixel_scale': None, 'single': False, 'blendheaders': True, 'allowed_memory': None, 'in_memory': True}, 'cube_build': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': False, 'input_dir': '', 'channel': 'all', 'band': 'all', 'grating': 'all', 'filter': 'all', 'output_type': 'band', 'scale1': 0.0, 'scale2': 0.0, 'scalew': 0.0, 'weighting': 'drizzle', 'coord_system': 'skyalign', 'rois': 0.0, 'roiw': 0.0, 'weight_power': 2.0, 'wavemin': None, 'wavemax': None, 'single': False, 'skip_dqflagging': False}, 'extract_1d': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'smoothing_length': None, 'bkg_fit': None, 'bkg_order': None, 'bkg_sigma_clip': 3.0, 'log_increment': 50, 'subtract_background': None, 'use_source_posn': None, 'center_xy': None, 'apply_apcorr': True, 'soss_threshold': 0.01, 'soss_n_os': 2, 'soss_transform': None, 'soss_tikfac': None, 'soss_width': 40.0, 'soss_bad_pix': 'model', 'soss_modelname': None}}}
2022-12-03 22:59:11,622 - stpipe.Spec2Pipeline - INFO - Prefetching reference files for dataset: 'mos_g140m_line1_NRS1_uncal.fits' reftypes = ['camera', 'collimator', 'dflat', 'disperser', 'distortion', 'fflat', 'filteroffset', 'flat', 'fore', 'fpa', 'fringe', 'ifufore', 'ifupost', 'ifuslicer', 'mrsxartcorr', 'msa', 'msaoper', 'ote', 'regions', 'sflat', 'specwcs', 'wavecorr', 'wavelengthrange', 'wfssbkg']
Running the spec2 pipeline...
2022-12-03 22:59:11,669 - stpipe.Spec2Pipeline - INFO - Prefetch for CAMERA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf'.
2022-12-03 22:59:11,674 - stpipe.Spec2Pipeline - INFO - Prefetch for COLLIMATOR reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf'.
2022-12-03 22:59:11,676 - stpipe.Spec2Pipeline - INFO - Prefetch for DFLAT reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_dflat_0001.fits'.
2022-12-03 22:59:11,678 - stpipe.Spec2Pipeline - INFO - Prefetch for DISPERSER reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0032.asdf'.
2022-12-03 22:59:11,680 - stpipe.Spec2Pipeline - INFO - Prefetch for DISTORTION reference file is 'N/A'.
2022-12-03 22:59:11,680 - stpipe.Spec2Pipeline - INFO - Prefetch for FFLAT reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_fflat_0018.fits'.
2022-12-03 22:59:11,682 - stpipe.Spec2Pipeline - INFO - Prefetch for FILTEROFFSET reference file is 'N/A'.
2022-12-03 22:59:11,682 - stpipe.Spec2Pipeline - INFO - Prefetch for FLAT reference file is 'N/A'.
2022-12-03 22:59:11,683 - stpipe.Spec2Pipeline - INFO - Prefetch for FORE reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_fore_0023.asdf'.
2022-12-03 22:59:11,684 - stpipe.Spec2Pipeline - INFO - Prefetch for FPA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf'.
2022-12-03 22:59:11,689 - stpipe.Spec2Pipeline - INFO - Prefetch for FRINGE reference file is 'N/A'.
2022-12-03 22:59:11,690 - stpipe.Spec2Pipeline - INFO - Prefetch for IFUFORE reference file is 'N/A'.
2022-12-03 22:59:11,690 - stpipe.Spec2Pipeline - INFO - Prefetch for IFUPOST reference file is 'N/A'.
2022-12-03 22:59:11,690 - stpipe.Spec2Pipeline - INFO - Prefetch for IFUSLICER reference file is 'N/A'.
2022-12-03 22:59:11,691 - stpipe.Spec2Pipeline - INFO - Prefetch for MRSXARTCORR reference file is 'N/A'.
2022-12-03 22:59:11,691 - stpipe.Spec2Pipeline - INFO - Prefetch for MSA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf'.
2022-12-03 22:59:11,693 - stpipe.Spec2Pipeline - INFO - Prefetch for MSAOPER reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_msaoper_0001.json'.
2022-12-03 22:59:11,695 - stpipe.Spec2Pipeline - INFO - Prefetch for OTE reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf'.
2022-12-03 22:59:11,697 - stpipe.Spec2Pipeline - INFO - Prefetch for REGIONS reference file is 'N/A'.
2022-12-03 22:59:11,697 - stpipe.Spec2Pipeline - INFO - Prefetch for SFLAT reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_sflat_0003.fits'.
2022-12-03 22:59:11,699 - stpipe.Spec2Pipeline - INFO - Prefetch for SPECWCS reference file is 'N/A'.
2022-12-03 22:59:11,699 - stpipe.Spec2Pipeline - INFO - Prefetch for WAVECORR reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_wavecorr_0004.asdf'.
2022-12-03 22:59:11,701 - stpipe.Spec2Pipeline - INFO - Prefetch for WAVELENGTHRANGE reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0004.asdf'.
2022-12-03 22:59:11,702 - stpipe.Spec2Pipeline - INFO - Prefetch for WFSSBKG reference file is 'N/A'.
2022-12-03 22:59:11,702 - stpipe.Spec2Pipeline - INFO - Starting calwebb_spec2 ...
2022-12-03 22:59:11,760 - stpipe.Spec2Pipeline - INFO - Processing product mos_g140m_line1_NRS1_uncal
2022-12-03 22:59:11,760 - stpipe.Spec2Pipeline - INFO - Working on input <ImageModel(2048, 2048) from mos_g140m_line1_NRS1_uncal.fits> ...
2022-12-03 22:59:11,878 - stpipe.Spec2Pipeline.assign_wcs - INFO - Step assign_wcs running with args (<ImageModel(2048, 2048) from mos_g140m_line1_NRS1_uncal.fits>,).
2022-12-03 22:59:11,880 - stpipe.Spec2Pipeline.assign_wcs - INFO - Step assign_wcs parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'sip_approx': True, 'sip_max_pix_error': 0.1, 'sip_degree': None, 'sip_max_inv_pix_error': 0.1, 'sip_inv_degree': None, 'sip_npoints': 12, 'slit_y_low': -0.55, 'slit_y_high': 0.55}
2022-12-03 22:59:12,032 - stpipe.Spec2Pipeline.assign_wcs - INFO - Retrieving open MSA slitlets for msa_metadata_id = 1 and dither_index = 1
2022-12-03 22:59:12,257 - stpipe.Spec2Pipeline.assign_wcs - INFO - gwa_ytilt is 0.1260581910610199 deg
2022-12-03 22:59:12,258 - stpipe.Spec2Pipeline.assign_wcs - INFO - gwa_xtilt is 0.3316612243652344 deg
2022-12-03 22:59:12,259 - stpipe.Spec2Pipeline.assign_wcs - INFO - theta_y correction: 0.0002496099796717191 deg
2022-12-03 22:59:12,260 - stpipe.Spec2Pipeline.assign_wcs - INFO - theta_x correction: 0.0 deg
2022-12-03 22:59:12,545 - stpipe.Spec2Pipeline.assign_wcs - INFO - Removing slit 6 from the list of open slits because the WCS bounding_box is completely outside the detector.
2022-12-03 22:59:12,558 - stpipe.Spec2Pipeline.assign_wcs - INFO - Removing slit 7 from the list of open slits because the WCS bounding_box is completely outside the detector.
2022-12-03 22:59:12,570 - stpipe.Spec2Pipeline.assign_wcs - INFO - Removing slit 8 from the list of open slits because the WCS bounding_box is completely outside the detector.
2022-12-03 22:59:12,583 - stpipe.Spec2Pipeline.assign_wcs - INFO - Removing slit 9 from the list of open slits because the WCS bounding_box is completely outside the detector.
2022-12-03 22:59:12,596 - stpipe.Spec2Pipeline.assign_wcs - INFO - Removing slit 10 from the list of open slits because the WCS bounding_box is completely outside the detector.
2022-12-03 22:59:12,608 - stpipe.Spec2Pipeline.assign_wcs - INFO - Removing slit 11 from the list of open slits because the WCS bounding_box is completely outside the detector.
2022-12-03 22:59:12,621 - stpipe.Spec2Pipeline.assign_wcs - INFO - Removing slit 14 from the list of open slits because the WCS bounding_box is completely outside the detector.
2022-12-03 22:59:12,633 - stpipe.Spec2Pipeline.assign_wcs - INFO - Removing slit 15 from the list of open slits because the WCS bounding_box is completely outside the detector.
2022-12-03 22:59:12,645 - stpipe.Spec2Pipeline.assign_wcs - INFO - Removing slit 16 from the list of open slits because the WCS bounding_box is completely outside the detector.
2022-12-03 22:59:12,658 - stpipe.Spec2Pipeline.assign_wcs - INFO - Removing slit 17 from the list of open slits because the WCS bounding_box is completely outside the detector.
2022-12-03 22:59:12,671 - stpipe.Spec2Pipeline.assign_wcs - INFO - Removing slit 18 from the list of open slits because the WCS bounding_box is completely outside the detector.
2022-12-03 22:59:12,683 - stpipe.Spec2Pipeline.assign_wcs - INFO - Removing slit 19 from the list of open slits because the WCS bounding_box is completely outside the detector.
2022-12-03 22:59:12,695 - stpipe.Spec2Pipeline.assign_wcs - INFO - Removing slit 21 from the list of open slits because the WCS bounding_box is completely outside the detector.
2022-12-03 22:59:12,707 - stpipe.Spec2Pipeline.assign_wcs - INFO - Removing slit 25 from the list of open slits because the WCS bounding_box is completely outside the detector.
2022-12-03 22:59:12,720 - stpipe.Spec2Pipeline.assign_wcs - INFO - Removing slit 26 from the list of open slits because the WCS bounding_box is completely outside the detector.
2022-12-03 22:59:12,732 - stpipe.Spec2Pipeline.assign_wcs - INFO - Removing slit 27 from the list of open slits because the WCS bounding_box is completely outside the detector.
2022-12-03 22:59:12,746 - stpipe.Spec2Pipeline.assign_wcs - INFO - Removing slit 29 from the list of open slits because the WCS bounding_box is completely outside the detector.
2022-12-03 22:59:12,759 - stpipe.Spec2Pipeline.assign_wcs - INFO - Removing slit 31 from the list of open slits because the WCS bounding_box is completely outside the detector.
2022-12-03 22:59:12,771 - stpipe.Spec2Pipeline.assign_wcs - INFO - Removing slit 32 from the list of open slits because the WCS bounding_box is completely outside the detector.
2022-12-03 22:59:12,783 - stpipe.Spec2Pipeline.assign_wcs - INFO - Removing slit 33 from the list of open slits because the WCS bounding_box is completely outside the detector.
2022-12-03 22:59:12,795 - stpipe.Spec2Pipeline.assign_wcs - INFO - Removing slit 35 from the list of open slits because the WCS bounding_box is completely outside the detector.
2022-12-03 22:59:12,809 - stpipe.Spec2Pipeline.assign_wcs - INFO - Removing slit 37 from the list of open slits because the WCS bounding_box is completely outside the detector.
2022-12-03 22:59:12,821 - stpipe.Spec2Pipeline.assign_wcs - INFO - Removing slit 38 from the list of open slits because the WCS bounding_box is completely outside the detector.
2022-12-03 22:59:12,833 - stpipe.Spec2Pipeline.assign_wcs - INFO - Removing slit 39 from the list of open slits because the WCS bounding_box is completely outside the detector.
2022-12-03 22:59:12,845 - stpipe.Spec2Pipeline.assign_wcs - INFO - Removing slit 41 from the list of open slits because the WCS bounding_box is completely outside the detector.
2022-12-03 22:59:12,880 - stpipe.Spec2Pipeline.assign_wcs - INFO - Removing slit 1 from the list of open slits because the WCS bounding_box is completely outside the detector.
2022-12-03 22:59:12,893 - stpipe.Spec2Pipeline.assign_wcs - INFO - Removing slit 2 from the list of open slits because the WCS bounding_box is completely outside the detector.
2022-12-03 22:59:12,905 - stpipe.Spec2Pipeline.assign_wcs - INFO - Removing slit 3 from the list of open slits because the WCS bounding_box is completely outside the detector.
2022-12-03 22:59:12,917 - stpipe.Spec2Pipeline.assign_wcs - INFO - Removing slit 4 from the list of open slits because the WCS bounding_box is completely outside the detector.
2022-12-03 22:59:12,929 - stpipe.Spec2Pipeline.assign_wcs - INFO - Removing slit 5 from the list of open slits because the WCS bounding_box is completely outside the detector.
2022-12-03 22:59:12,941 - stpipe.Spec2Pipeline.assign_wcs - INFO - Removing slit 12 from the list of open slits because the WCS bounding_box is completely outside the detector.
2022-12-03 22:59:12,954 - stpipe.Spec2Pipeline.assign_wcs - INFO - Removing slit 13 from the list of open slits because the WCS bounding_box is completely outside the detector.
2022-12-03 22:59:12,966 - stpipe.Spec2Pipeline.assign_wcs - INFO - Removing slit 20 from the list of open slits because the WCS bounding_box is completely outside the detector.
2022-12-03 22:59:12,978 - stpipe.Spec2Pipeline.assign_wcs - INFO - Removing slit 22 from the list of open slits because the WCS bounding_box is completely outside the detector.
2022-12-03 22:59:12,990 - stpipe.Spec2Pipeline.assign_wcs - INFO - Removing slit 23 from the list of open slits because the WCS bounding_box is completely outside the detector.
2022-12-03 22:59:13,002 - stpipe.Spec2Pipeline.assign_wcs - INFO - Removing slit 24 from the list of open slits because the WCS bounding_box is completely outside the detector.
2022-12-03 22:59:13,015 - stpipe.Spec2Pipeline.assign_wcs - INFO - Removing slit 28 from the list of open slits because the WCS bounding_box is completely outside the detector.
2022-12-03 22:59:13,027 - stpipe.Spec2Pipeline.assign_wcs - INFO - Removing slit 30 from the list of open slits because the WCS bounding_box is completely outside the detector.
2022-12-03 22:59:13,039 - stpipe.Spec2Pipeline.assign_wcs - INFO - Removing slit 34 from the list of open slits because the WCS bounding_box is completely outside the detector.
2022-12-03 22:59:13,051 - stpipe.Spec2Pipeline.assign_wcs - INFO - Removing slit 36 from the list of open slits because the WCS bounding_box is completely outside the detector.
2022-12-03 22:59:13,063 - stpipe.Spec2Pipeline.assign_wcs - INFO - Removing slit 40 from the list of open slits because the WCS bounding_box is completely outside the detector.
2022-12-03 22:59:13,353 - stpipe.Spec2Pipeline.assign_wcs - INFO - Slits projected on detector NRS1: [42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68]
2022-12-03 22:59:13,353 - stpipe.Spec2Pipeline.assign_wcs - INFO - Computing WCS for 27 open slitlets
2022-12-03 22:59:13,389 - stpipe.Spec2Pipeline.assign_wcs - INFO - gwa_ytilt is 0.1260581910610199 deg
2022-12-03 22:59:13,389 - stpipe.Spec2Pipeline.assign_wcs - INFO - gwa_xtilt is 0.3316612243652344 deg
2022-12-03 22:59:13,390 - stpipe.Spec2Pipeline.assign_wcs - INFO - theta_y correction: 0.0002496099796717191 deg
2022-12-03 22:59:13,391 - stpipe.Spec2Pipeline.assign_wcs - INFO - theta_x correction: 0.0 deg
2022-12-03 22:59:13,407 - stpipe.Spec2Pipeline.assign_wcs - INFO - SPORDER= -1, wrange=[9.7e-07, 1.89e-06]
2022-12-03 22:59:13,557 - stpipe.Spec2Pipeline.assign_wcs - INFO - There are 2 open slits in quadrant 1
2022-12-03 22:59:13,573 - stpipe.Spec2Pipeline.assign_wcs - INFO - There are 11 open slits in quadrant 2
2022-12-03 22:59:13,657 - stpipe.Spec2Pipeline.assign_wcs - INFO - There are 4 open slits in quadrant 3
2022-12-03 22:59:13,688 - stpipe.Spec2Pipeline.assign_wcs - INFO - There are 10 open slits in quadrant 4
2022-12-03 22:59:13,899 - stpipe.Spec2Pipeline.assign_wcs - INFO - There are 0 open slits in quadrant 5
2022-12-03 22:59:14,069 - stpipe.Spec2Pipeline.assign_wcs - INFO - Created a NIRSPEC nrs_msaspec pipeline with references {'distortion': None, 'filteroffset': None, 'specwcs': None, 'regions': None, 'wavelengthrange': '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0004.asdf', 'camera': '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf', 'collimator': '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf', 'disperser': '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0032.asdf', 'fore': '/grp/crds/cache/references/jwst/jwst_nirspec_fore_0023.asdf', 'fpa': '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf', 'msa': '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf', 'ote': '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf', 'ifupost': None, 'ifufore': None, 'ifuslicer': None, 'msametafile': 'V8460001000101_msa.fits'}
2022-12-03 22:59:14,942 - stpipe.Spec2Pipeline.assign_wcs - INFO - COMPLETED assign_wcs
2022-12-03 22:59:14,955 - stpipe.Spec2Pipeline.assign_wcs - INFO - Step assign_wcs done
2022-12-03 22:59:15,096 - stpipe.Spec2Pipeline.bkg_subtract - INFO - Step bkg_subtract running with args (<ImageModel(2048, 2048) from mos_g140m_line1_NRS1_uncal.fits>, []).
2022-12-03 22:59:15,098 - stpipe.Spec2Pipeline.bkg_subtract - INFO - Step bkg_subtract parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'save_combined_background': False, 'sigma': 3.0, 'maxiters': None, 'wfss_mmag_extract': None}
2022-12-03 22:59:15,098 - stpipe.Spec2Pipeline.bkg_subtract - INFO - Step skipped.
2022-12-03 22:59:15,101 - stpipe.Spec2Pipeline.bkg_subtract - INFO - Step bkg_subtract done
2022-12-03 22:59:15,237 - stpipe.Spec2Pipeline.imprint_subtract - INFO - Step imprint_subtract running with args (<ImageModel(2048, 2048) from mos_g140m_line1_NRS1_uncal.fits>, []).
2022-12-03 22:59:15,238 - stpipe.Spec2Pipeline.imprint_subtract - INFO - Step imprint_subtract parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': ''}
2022-12-03 22:59:15,239 - stpipe.Spec2Pipeline.imprint_subtract - INFO - Step skipped.
2022-12-03 22:59:15,241 - stpipe.Spec2Pipeline.imprint_subtract - INFO - Step imprint_subtract done
2022-12-03 22:59:15,376 - stpipe.Spec2Pipeline.msa_flagging - INFO - Step msa_flagging running with args (<ImageModel(2048, 2048) from mos_g140m_line1_NRS1_uncal.fits>,).
2022-12-03 22:59:15,378 - stpipe.Spec2Pipeline.msa_flagging - INFO - Step msa_flagging parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': ''}
2022-12-03 22:59:15,395 - stpipe.Spec2Pipeline.msa_flagging - INFO - Using reference file /grp/crds/cache/references/jwst/jwst_nirspec_msaoper_0001.json
2022-12-03 22:59:15,396 - stpipe.JwstStep - INFO - JwstStep instance created.
2022-12-03 22:59:15,525 - stpipe.Spec2Pipeline.msa_flagging - INFO - gwa_ytilt is 0.1260581910610199 deg
2022-12-03 22:59:15,526 - stpipe.Spec2Pipeline.msa_flagging - INFO - gwa_xtilt is 0.3316612243652344 deg
2022-12-03 22:59:15,527 - stpipe.Spec2Pipeline.msa_flagging - INFO - theta_y correction: 0.0002496099796717191 deg
2022-12-03 22:59:15,528 - stpipe.Spec2Pipeline.msa_flagging - INFO - theta_x correction: 0.0 deg
2022-12-03 22:59:15,542 - stpipe.Spec2Pipeline.msa_flagging - INFO - SPORDER= -1, wrange=[9.7e-07, 1.89e-06]
2022-12-03 22:59:15,690 - stpipe.Spec2Pipeline.msa_flagging - INFO - There are 5 open slits in quadrant 1
2022-12-03 22:59:15,727 - stpipe.Spec2Pipeline.msa_flagging - INFO - There are 3 open slits in quadrant 2
2022-12-03 22:59:15,750 - stpipe.Spec2Pipeline.msa_flagging - INFO - There are 9 open slits in quadrant 3
2022-12-03 22:59:15,818 - stpipe.Spec2Pipeline.msa_flagging - INFO - There are 3 open slits in quadrant 4
2022-12-03 22:59:15,841 - stpipe.Spec2Pipeline.msa_flagging - INFO - There are 0 open slits in quadrant 5
/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/astropy/modeling/bounding_box.py:83: RuntimeWarning: Invalid interval: upper bound 2047.5 is strictly less than lower bound 2324.820049828629.
warnings.warn(f"Invalid interval: upper bound {upper} "
/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/astropy/modeling/bounding_box.py:83: RuntimeWarning: Invalid interval: upper bound 2047.5 is strictly less than lower bound 2244.599990785436.
warnings.warn(f"Invalid interval: upper bound {upper} "
2022-12-03 22:59:28,950 - stpipe.Spec2Pipeline.msa_flagging - INFO - Step msa_flagging done
2022-12-03 22:59:29,264 - stpipe.Spec2Pipeline.extract_2d - INFO - Step extract_2d running with args (<ImageModel(2048, 2048) from mos_g140m_line1_NRS1_uncal.fits>,).
2022-12-03 22:59:29,265 - stpipe.Spec2Pipeline.extract_2d - INFO - Step extract_2d parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'slit_name': None, 'extract_orders': None, 'grism_objects': None, 'tsgrism_extract_height': None, 'wfss_extract_half_height': 5, 'wfss_mmag_extract': None, 'wfss_nbright': 1000}
2022-12-03 22:59:29,303 - stpipe.Spec2Pipeline.extract_2d - INFO - EXP_TYPE is NRS_MSASPEC
2022-12-03 22:59:29,770 - stpipe.Spec2Pipeline.extract_2d - INFO - Name of subarray extracted: 53
2022-12-03 22:59:29,772 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray x-extents are: 1542 2048
2022-12-03 22:59:29,772 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray y-extents are: 1316 1326
2022-12-03 22:59:29,963 - stpipe.Spec2Pipeline.extract_2d - INFO - set slit_attributes completed
2022-12-03 22:59:29,972 - stpipe.Spec2Pipeline.extract_2d - INFO - Update S_REGION to POLYGON ICRS 156.226123221 -45.673642180 156.225994086 -45.673519691 156.225931834 -45.673551545 156.226060967 -45.673674035
2022-12-03 22:59:29,973 - stpipe.Spec2Pipeline.extract_2d - INFO - Updated S_REGION to POLYGON ICRS 156.226123221 -45.673642180 156.225994086 -45.673519691 156.225931834 -45.673551545 156.226060967 -45.673674035
2022-12-03 22:59:30,599 - stpipe.Spec2Pipeline.extract_2d - INFO - Name of subarray extracted: 54
2022-12-03 22:59:30,600 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray x-extents are: 1542 2048
2022-12-03 22:59:30,600 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray y-extents are: 1306 1316
2022-12-03 22:59:30,788 - stpipe.Spec2Pipeline.extract_2d - INFO - set slit_attributes completed
2022-12-03 22:59:30,797 - stpipe.Spec2Pipeline.extract_2d - INFO - Update S_REGION to POLYGON ICRS 156.225872406 -45.673404272 156.225743296 -45.673281804 156.225681049 -45.673313656 156.225810156 -45.673436124
2022-12-03 22:59:30,798 - stpipe.Spec2Pipeline.extract_2d - INFO - Updated S_REGION to POLYGON ICRS 156.225872406 -45.673404272 156.225743296 -45.673281804 156.225681049 -45.673313656 156.225810156 -45.673436124
2022-12-03 22:59:31,433 - stpipe.Spec2Pipeline.extract_2d - INFO - Name of subarray extracted: 42
2022-12-03 22:59:31,434 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray x-extents are: 2018 2048
2022-12-03 22:59:31,434 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray y-extents are: 546 555
2022-12-03 22:59:31,621 - stpipe.Spec2Pipeline.extract_2d - INFO - set slit_attributes completed
2022-12-03 22:59:31,629 - stpipe.Spec2Pipeline.extract_2d - INFO - Update S_REGION to POLYGON ICRS 156.223646010 -45.647128995 156.223518121 -45.647008321 156.223456024 -45.647039957 156.223583911 -45.647160632
2022-12-03 22:59:31,631 - stpipe.Spec2Pipeline.extract_2d - INFO - Updated S_REGION to POLYGON ICRS 156.223646010 -45.647128995 156.223518121 -45.647008321 156.223456024 -45.647039957 156.223583911 -45.647160632
2022-12-03 22:59:32,465 - stpipe.Spec2Pipeline.extract_2d - INFO - Name of subarray extracted: 43
2022-12-03 22:59:32,466 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray x-extents are: 1970 2048
2022-12-03 22:59:32,466 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray y-extents are: 415 424
2022-12-03 22:59:32,655 - stpipe.Spec2Pipeline.extract_2d - INFO - set slit_attributes completed
2022-12-03 22:59:32,664 - stpipe.Spec2Pipeline.extract_2d - INFO - Update S_REGION to POLYGON ICRS 156.218966486 -45.644829601 156.218838959 -45.644709141 156.218776943 -45.644740759 156.218904467 -45.644861220
2022-12-03 22:59:32,665 - stpipe.Spec2Pipeline.extract_2d - INFO - Updated S_REGION to POLYGON ICRS 156.218966486 -45.644829601 156.218838959 -45.644709141 156.218776943 -45.644740759 156.218904467 -45.644861220
2022-12-03 22:59:33,119 - stpipe.Spec2Pipeline.extract_2d - INFO - Name of subarray extracted: 44
2022-12-03 22:59:33,120 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray x-extents are: 1969 2048
2022-12-03 22:59:33,120 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray y-extents are: 405 414
2022-12-03 22:59:33,304 - stpipe.Spec2Pipeline.extract_2d - INFO - set slit_attributes completed
2022-12-03 22:59:33,312 - stpipe.Spec2Pipeline.extract_2d - INFO - Update S_REGION to POLYGON ICRS 156.218718991 -45.644595818 156.218591488 -45.644475376 156.218529475 -45.644506992 156.218656977 -45.644627436
2022-12-03 22:59:33,313 - stpipe.Spec2Pipeline.extract_2d - INFO - Updated S_REGION to POLYGON ICRS 156.218718991 -45.644595818 156.218591488 -45.644475376 156.218529475 -45.644506992 156.218656977 -45.644627436
2022-12-03 22:59:33,992 - stpipe.Spec2Pipeline.extract_2d - INFO - Name of subarray extracted: 45
2022-12-03 22:59:33,993 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray x-extents are: 1908 2048
2022-12-03 22:59:33,993 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray y-extents are: 531 541
2022-12-03 22:59:34,179 - stpipe.Spec2Pipeline.extract_2d - INFO - set slit_attributes completed
2022-12-03 22:59:34,188 - stpipe.Spec2Pipeline.extract_2d - INFO - Update S_REGION to POLYGON ICRS 156.219673020 -45.648613077 156.219545303 -45.648492383 156.219483265 -45.648524021 156.219610979 -45.648644716
2022-12-03 22:59:34,189 - stpipe.Spec2Pipeline.extract_2d - INFO - Updated S_REGION to POLYGON ICRS 156.219673020 -45.648613077 156.219545303 -45.648492383 156.219483265 -45.648524021 156.219610979 -45.648644716
2022-12-03 22:59:34,869 - stpipe.Spec2Pipeline.extract_2d - INFO - Name of subarray extracted: 46
2022-12-03 22:59:34,869 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray x-extents are: 1882 2048
2022-12-03 22:59:34,870 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray y-extents are: 203 213
2022-12-03 22:59:35,061 - stpipe.Spec2Pipeline.extract_2d - INFO - set slit_attributes completed
2022-12-03 22:59:35,070 - stpipe.Spec2Pipeline.extract_2d - INFO - Update S_REGION to POLYGON ICRS 156.211127421 -45.641279813 156.211000463 -45.641159678 156.210938572 -45.641191268 156.211065527 -45.641311404
2022-12-03 22:59:35,071 - stpipe.Spec2Pipeline.extract_2d - INFO - Updated S_REGION to POLYGON ICRS 156.211127421 -45.641279813 156.211000463 -45.641159678 156.210938572 -45.641191268 156.211065527 -45.641311404
2022-12-03 22:59:35,531 - stpipe.Spec2Pipeline.extract_2d - INFO - Name of subarray extracted: 47
2022-12-03 22:59:35,532 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray x-extents are: 1815 2048
2022-12-03 22:59:35,533 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray y-extents are: 567 576
2022-12-03 22:59:35,726 - stpipe.Spec2Pipeline.extract_2d - INFO - set slit_attributes completed
2022-12-03 22:59:35,734 - stpipe.Spec2Pipeline.extract_2d - INFO - Update S_REGION to POLYGON ICRS 156.217456055 -45.651006881 156.217328370 -45.650886079 156.217266356 -45.650917729 156.217394038 -45.651038531
2022-12-03 22:59:35,736 - stpipe.Spec2Pipeline.extract_2d - INFO - Updated S_REGION to POLYGON ICRS 156.217456055 -45.651006881 156.217328370 -45.650886079 156.217266356 -45.650917729 156.217394038 -45.651038531
2022-12-03 22:59:36,450 - stpipe.Spec2Pipeline.extract_2d - INFO - Name of subarray extracted: 48
2022-12-03 22:59:36,451 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray x-extents are: 1815 2048
2022-12-03 22:59:36,451 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray y-extents are: 562 571
2022-12-03 22:59:36,640 - stpipe.Spec2Pipeline.extract_2d - INFO - set slit_attributes completed
2022-12-03 22:59:36,649 - stpipe.Spec2Pipeline.extract_2d - INFO - Update S_REGION to POLYGON ICRS 156.217332149 -45.650889654 156.217204477 -45.650768862 156.217142464 -45.650800511 156.217270135 -45.650921304
2022-12-03 22:59:36,650 - stpipe.Spec2Pipeline.extract_2d - INFO - Updated S_REGION to POLYGON ICRS 156.217332149 -45.650889654 156.217204477 -45.650768862 156.217142464 -45.650800511 156.217270135 -45.650921304
2022-12-03 22:59:37,327 - stpipe.Spec2Pipeline.extract_2d - INFO - Name of subarray extracted: 49
2022-12-03 22:59:37,327 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray x-extents are: 1791 2048
2022-12-03 22:59:37,328 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray y-extents are: 632 642
2022-12-03 22:59:37,516 - stpipe.Spec2Pipeline.extract_2d - INFO - set slit_attributes completed
2022-12-03 22:59:37,525 - stpipe.Spec2Pipeline.extract_2d - INFO - Update S_REGION to POLYGON ICRS 156.218210913 -45.652969013 156.218083107 -45.652848076 156.218021073 -45.652879740 156.218148877 -45.653000678
2022-12-03 22:59:37,526 - stpipe.Spec2Pipeline.extract_2d - INFO - Updated S_REGION to POLYGON ICRS 156.218210913 -45.652969013 156.218083107 -45.652848076 156.218021073 -45.652879740 156.218148877 -45.653000678
2022-12-03 22:59:37,983 - stpipe.Spec2Pipeline.extract_2d - INFO - Name of subarray extracted: 50
2022-12-03 22:59:37,983 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray x-extents are: 1774 2048
2022-12-03 22:59:37,984 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray y-extents are: 239 249
2022-12-03 22:59:38,169 - stpipe.Spec2Pipeline.extract_2d - INFO - set slit_attributes completed
2022-12-03 22:59:38,178 - stpipe.Spec2Pipeline.extract_2d - INFO - Update S_REGION to POLYGON ICRS 156.208399869 -45.643929179 156.208272959 -45.643808942 156.208211096 -45.643840541 156.208338005 -45.643960778
2022-12-03 22:59:38,179 - stpipe.Spec2Pipeline.extract_2d - INFO - Updated S_REGION to POLYGON ICRS 156.208399869 -45.643929179 156.208272959 -45.643808942 156.208211096 -45.643840541 156.208338005 -45.643960778
2022-12-03 22:59:38,899 - stpipe.Spec2Pipeline.extract_2d - INFO - Name of subarray extracted: 51
2022-12-03 22:59:38,900 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray x-extents are: 1759 2048
2022-12-03 22:59:38,900 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray y-extents are: 431 441
2022-12-03 22:59:39,089 - stpipe.Spec2Pipeline.extract_2d - INFO - set slit_attributes completed
2022-12-03 22:59:39,098 - stpipe.Spec2Pipeline.extract_2d - INFO - Update S_REGION to POLYGON ICRS 156.212403238 -45.648718689 156.212275928 -45.648598111 156.212213993 -45.648629742 156.212341301 -45.648750320
2022-12-03 22:59:39,100 - stpipe.Spec2Pipeline.extract_2d - INFO - Updated S_REGION to POLYGON ICRS 156.212403238 -45.648718689 156.212275928 -45.648598111 156.212213993 -45.648629742 156.212341301 -45.648750320
2022-12-03 22:59:39,564 - stpipe.Spec2Pipeline.extract_2d - INFO - Name of subarray extracted: 52
2022-12-03 22:59:39,565 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray x-extents are: 1722 2048
2022-12-03 22:59:39,565 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray y-extents are: 804 814
2022-12-03 22:59:39,755 - stpipe.Spec2Pipeline.extract_2d - INFO - set slit_attributes completed
2022-12-03 22:59:39,764 - stpipe.Spec2Pipeline.extract_2d - INFO - Update S_REGION to POLYGON ICRS 156.219947139 -45.658234585 156.219819020 -45.658113276 156.219756938 -45.658144979 156.219885055 -45.658266289
2022-12-03 22:59:39,765 - stpipe.Spec2Pipeline.extract_2d - INFO - Updated S_REGION to POLYGON ICRS 156.219947139 -45.658234585 156.219819020 -45.658113276 156.219756938 -45.658144979 156.219885055 -45.658266289
2022-12-03 22:59:40,495 - stpipe.Spec2Pipeline.extract_2d - INFO - Name of subarray extracted: 55
2022-12-03 22:59:40,496 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray x-extents are: 1022 2048
2022-12-03 22:59:40,496 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray y-extents are: 1416 1430
2022-12-03 22:59:40,697 - stpipe.Spec2Pipeline.extract_2d - INFO - set slit_attributes completed
2022-12-03 22:59:40,706 - stpipe.Spec2Pipeline.extract_2d - INFO - Update S_REGION to POLYGON ICRS 156.211226719 -45.684941334 156.211098073 -45.684818233 156.211035880 -45.684850241 156.211164524 -45.684973343
2022-12-03 22:59:40,707 - stpipe.Spec2Pipeline.extract_2d - INFO - Updated S_REGION to POLYGON ICRS 156.211226719 -45.684941334 156.211098073 -45.684818233 156.211035880 -45.684850241 156.211164524 -45.684973343
2022-12-03 22:59:41,412 - stpipe.Spec2Pipeline.extract_2d - INFO - Name of subarray extracted: 65
2022-12-03 22:59:41,413 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray x-extents are: 427 1893
2022-12-03 22:59:41,413 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray y-extents are: 1252 1273
2022-12-03 22:59:41,618 - stpipe.Spec2Pipeline.extract_2d - INFO - set slit_attributes completed
2022-12-03 22:59:41,627 - stpipe.Spec2Pipeline.extract_2d - INFO - Update S_REGION to POLYGON ICRS 156.187669449 -45.691221095 156.187541886 -45.691097893 156.187479754 -45.691130071 156.187607315 -45.691253274
2022-12-03 22:59:41,628 - stpipe.Spec2Pipeline.extract_2d - INFO - Updated S_REGION to POLYGON ICRS 156.187669449 -45.691221095 156.187541886 -45.691097893 156.187479754 -45.691130071 156.187607315 -45.691253274
2022-12-03 22:59:42,091 - stpipe.Spec2Pipeline.extract_2d - INFO - Name of subarray extracted: 66
2022-12-03 22:59:42,092 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray x-extents are: 426 1892
2022-12-03 22:59:42,093 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray y-extents are: 1453 1474
2022-12-03 22:59:42,301 - stpipe.Spec2Pipeline.extract_2d - INFO - set slit_attributes completed
2022-12-03 22:59:42,309 - stpipe.Spec2Pipeline.extract_2d - INFO - Update S_REGION to POLYGON ICRS 156.192290190 -45.696194513 156.192162195 -45.696070854 156.192099979 -45.696103094 156.192227972 -45.696226755
2022-12-03 22:59:42,310 - stpipe.Spec2Pipeline.extract_2d - INFO - Updated S_REGION to POLYGON ICRS 156.192290190 -45.696194513 156.192162195 -45.696070854 156.192099979 -45.696103094 156.192227972 -45.696226755
2022-12-03 22:59:43,046 - stpipe.Spec2Pipeline.extract_2d - INFO - Name of subarray extracted: 68
2022-12-03 22:59:43,048 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray x-extents are: 375 1842
2022-12-03 22:59:43,048 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray y-extents are: 1477 1500
2022-12-03 22:59:43,268 - stpipe.Spec2Pipeline.extract_2d - INFO - set slit_attributes completed
2022-12-03 22:59:43,277 - stpipe.Spec2Pipeline.extract_2d - INFO - Update S_REGION to POLYGON ICRS 156.191192483 -45.697686513 156.191064493 -45.697562756 156.191002259 -45.697595026 156.191130247 -45.697718784
2022-12-03 22:59:43,279 - stpipe.Spec2Pipeline.extract_2d - INFO - Updated S_REGION to POLYGON ICRS 156.191192483 -45.697686513 156.191064493 -45.697562756 156.191002259 -45.697595026 156.191130247 -45.697718784
2022-12-03 22:59:43,739 - stpipe.Spec2Pipeline.extract_2d - INFO - Name of subarray extracted: 56
2022-12-03 22:59:43,739 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray x-extents are: 872 2048
2022-12-03 22:59:43,740 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray y-extents are: 769 783
2022-12-03 22:59:43,932 - stpipe.Spec2Pipeline.extract_2d - INFO - set slit_attributes completed
2022-12-03 22:59:43,941 - stpipe.Spec2Pipeline.extract_2d - INFO - Update S_REGION to POLYGON ICRS 156.191122501 -45.671742959 156.190995485 -45.671621176 156.190933579 -45.671653049 156.191060593 -45.671774833
2022-12-03 22:59:43,942 - stpipe.Spec2Pipeline.extract_2d - INFO - Updated S_REGION to POLYGON ICRS 156.191122501 -45.671742959 156.190995485 -45.671621176 156.190933579 -45.671653049 156.191060593 -45.671774833
2022-12-03 22:59:44,688 - stpipe.Spec2Pipeline.extract_2d - INFO - Name of subarray extracted: 57
2022-12-03 22:59:44,689 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray x-extents are: 805 2048
2022-12-03 22:59:44,689 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray y-extents are: 355 370
2022-12-03 22:59:44,887 - stpipe.Spec2Pipeline.extract_2d - INFO - set slit_attributes completed
2022-12-03 22:59:44,896 - stpipe.Spec2Pipeline.extract_2d - INFO - Update S_REGION to POLYGON ICRS 156.179343124 -45.662963603 156.179216994 -45.662842617 156.179155236 -45.662874401 156.179281365 -45.662995389
2022-12-03 22:59:44,898 - stpipe.Spec2Pipeline.extract_2d - INFO - Updated S_REGION to POLYGON ICRS 156.179343124 -45.662963603 156.179216994 -45.662842617 156.179155236 -45.662874401 156.179281365 -45.662995389
2022-12-03 22:59:45,373 - stpipe.Spec2Pipeline.extract_2d - INFO - Name of subarray extracted: 58
2022-12-03 22:59:45,374 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray x-extents are: 731 2048
2022-12-03 22:59:45,374 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray y-extents are: 259 275
2022-12-03 22:59:45,569 - stpipe.Spec2Pipeline.extract_2d - INFO - set slit_attributes completed
2022-12-03 22:59:45,578 - stpipe.Spec2Pipeline.extract_2d - INFO - Update S_REGION to POLYGON ICRS 156.174716949 -45.661919476 156.174591057 -45.661798624 156.174529324 -45.661830406 156.174655215 -45.661951259
2022-12-03 22:59:45,580 - stpipe.Spec2Pipeline.extract_2d - INFO - Updated S_REGION to POLYGON ICRS 156.174716949 -45.661919476 156.174591057 -45.661798624 156.174529324 -45.661830406 156.174655215 -45.661951259
2022-12-03 22:59:46,366 - stpipe.Spec2Pipeline.extract_2d - INFO - Name of subarray extracted: 59
2022-12-03 22:59:46,367 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray x-extents are: 658 2048
2022-12-03 22:59:46,367 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray y-extents are: 72 88
2022-12-03 22:59:46,563 - stpipe.Spec2Pipeline.extract_2d - INFO - set slit_attributes completed
2022-12-03 22:59:46,573 - stpipe.Spec2Pipeline.extract_2d - INFO - Update S_REGION to POLYGON ICRS 156.167987333 -45.658726530 156.167861814 -45.658605973 156.167800128 -45.658637729 156.167925645 -45.658758288
2022-12-03 22:59:46,574 - stpipe.Spec2Pipeline.extract_2d - INFO - Updated S_REGION to POLYGON ICRS 156.167987333 -45.658726530 156.167861814 -45.658605973 156.167800128 -45.658637729 156.167925645 -45.658758288
2022-12-03 22:59:47,038 - stpipe.Spec2Pipeline.extract_2d - INFO - Name of subarray extracted: 60
2022-12-03 22:59:47,039 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray x-extents are: 641 2048
2022-12-03 22:59:47,039 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray y-extents are: 682 699
2022-12-03 22:59:47,283 - stpipe.Spec2Pipeline.extract_2d - INFO - set slit_attributes completed
2022-12-03 22:59:47,292 - stpipe.Spec2Pipeline.extract_2d - INFO - Update S_REGION to POLYGON ICRS 156.181507045 -45.673611447 156.181380443 -45.673489678 156.181318559 -45.673521602 156.181445158 -45.673643373
2022-12-03 22:59:47,293 - stpipe.Spec2Pipeline.extract_2d - INFO - Updated S_REGION to POLYGON ICRS 156.181507045 -45.673611447 156.181380443 -45.673489678 156.181318559 -45.673521602 156.181445158 -45.673643373
2022-12-03 22:59:48,070 - stpipe.Spec2Pipeline.extract_2d - INFO - Name of subarray extracted: 61
2022-12-03 22:59:48,071 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray x-extents are: 620 2048
2022-12-03 22:59:48,071 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray y-extents are: 823 840
2022-12-03 22:59:48,272 - stpipe.Spec2Pipeline.extract_2d - INFO - set slit_attributes completed
2022-12-03 22:59:48,281 - stpipe.Spec2Pipeline.extract_2d - INFO - Update S_REGION to POLYGON ICRS 156.184095390 -45.677365774 156.183968526 -45.677243686 156.183906587 -45.677275659 156.184033450 -45.677397747
2022-12-03 22:59:48,282 - stpipe.Spec2Pipeline.extract_2d - INFO - Updated S_REGION to POLYGON ICRS 156.184095390 -45.677365774 156.183968526 -45.677243686 156.183906587 -45.677275659 156.184033450 -45.677397747
2022-12-03 22:59:48,741 - stpipe.Spec2Pipeline.extract_2d - INFO - Name of subarray extracted: 62
2022-12-03 22:59:48,742 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray x-extents are: 570 2032
2022-12-03 22:59:48,742 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray y-extents are: 510 528
2022-12-03 22:59:48,940 - stpipe.Spec2Pipeline.extract_2d - INFO - set slit_attributes completed
2022-12-03 22:59:48,949 - stpipe.Spec2Pipeline.extract_2d - INFO - Update S_REGION to POLYGON ICRS 156.175200333 -45.670700849 156.175074128 -45.670579384 156.175012293 -45.670611285 156.175138497 -45.670732752
2022-12-03 22:59:48,950 - stpipe.Spec2Pipeline.extract_2d - INFO - Updated S_REGION to POLYGON ICRS 156.175200333 -45.670700849 156.175074128 -45.670579384 156.175012293 -45.670611285 156.175138497 -45.670732752
2022-12-03 22:59:49,757 - stpipe.Spec2Pipeline.extract_2d - INFO - Name of subarray extracted: 63
2022-12-03 22:59:49,758 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray x-extents are: 454 1915
2022-12-03 22:59:49,759 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray y-extents are: 182 200
2022-12-03 22:59:49,977 - stpipe.Spec2Pipeline.extract_2d - INFO - set slit_attributes completed
2022-12-03 22:59:49,986 - stpipe.Spec2Pipeline.extract_2d - INFO - Update S_REGION to POLYGON ICRS 156.163846800 -45.664818400 156.163721256 -45.664697497 156.163659498 -45.664729348 156.163785040 -45.664850252
2022-12-03 22:59:49,987 - stpipe.Spec2Pipeline.extract_2d - INFO - Updated S_REGION to POLYGON ICRS 156.163846800 -45.664818400 156.163721256 -45.664697497 156.163659498 -45.664729348 156.163785040 -45.664850252
2022-12-03 22:59:50,446 - stpipe.Spec2Pipeline.extract_2d - INFO - Name of subarray extracted: 64
2022-12-03 22:59:50,447 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray x-extents are: 454 1915
2022-12-03 22:59:50,447 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray y-extents are: 177 195
2022-12-03 22:59:50,687 - stpipe.Spec2Pipeline.extract_2d - INFO - set slit_attributes completed
2022-12-03 22:59:50,695 - stpipe.Spec2Pipeline.extract_2d - INFO - Update S_REGION to POLYGON ICRS 156.163724974 -45.664701077 156.163599439 -45.664580184 156.163537682 -45.664612033 156.163663216 -45.664732928
2022-12-03 22:59:50,697 - stpipe.Spec2Pipeline.extract_2d - INFO - Updated S_REGION to POLYGON ICRS 156.163724974 -45.664701077 156.163599439 -45.664580184 156.163537682 -45.664612033 156.163663216 -45.664732928
2022-12-03 22:59:51,535 - stpipe.Spec2Pipeline.extract_2d - INFO - Name of subarray extracted: 67
2022-12-03 22:59:51,536 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray x-extents are: 328 1789
2022-12-03 22:59:51,537 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray y-extents are: 131 150
2022-12-03 22:59:51,765 - stpipe.Spec2Pipeline.extract_2d - INFO - set slit_attributes completed
2022-12-03 22:59:51,774 - stpipe.Spec2Pipeline.extract_2d - INFO - Update S_REGION to POLYGON ICRS 156.158533940 -45.665758025 156.158408563 -45.665637125 156.158346784 -45.665669007 156.158472159 -45.665789909
2022-12-03 22:59:51,775 - stpipe.Spec2Pipeline.extract_2d - INFO - Updated S_REGION to POLYGON ICRS 156.158533940 -45.665758025 156.158408563 -45.665637125 156.158346784 -45.665669007 156.158472159 -45.665789909
2022-12-03 22:59:53,398 - stpipe.Spec2Pipeline.extract_2d - INFO - Step extract_2d done
2022-12-03 22:59:53,710 - stpipe.Spec2Pipeline.srctype - INFO - Step srctype running with args (<MultiSlitModel from mos_g140m_line1_NRS1_uncal.fits>,).
2022-12-03 22:59:53,712 - stpipe.Spec2Pipeline.srctype - INFO - Step srctype parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'source_type': None}
2022-12-03 22:59:53,719 - stpipe.Spec2Pipeline.srctype - INFO - Input EXP_TYPE is NRS_MSASPEC
2022-12-03 22:59:53,720 - stpipe.Spec2Pipeline.srctype - INFO - source_id=53, stellarity=0.0000, type=EXTENDED
2022-12-03 22:59:53,722 - stpipe.Spec2Pipeline.srctype - INFO - source_id=54, stellarity=0.0000, type=EXTENDED
2022-12-03 22:59:53,723 - stpipe.Spec2Pipeline.srctype - INFO - source_id=42, stellarity=0.0000, type=EXTENDED
2022-12-03 22:59:53,725 - stpipe.Spec2Pipeline.srctype - INFO - source_id=43, stellarity=0.0000, type=EXTENDED
2022-12-03 22:59:53,726 - stpipe.Spec2Pipeline.srctype - INFO - source_id=44, stellarity=0.0000, type=EXTENDED
2022-12-03 22:59:53,727 - stpipe.Spec2Pipeline.srctype - INFO - source_id=45, stellarity=0.0000, type=EXTENDED
2022-12-03 22:59:53,728 - stpipe.Spec2Pipeline.srctype - INFO - source_id=46, stellarity=0.0000, type=EXTENDED
2022-12-03 22:59:53,730 - stpipe.Spec2Pipeline.srctype - INFO - source_id=47, stellarity=0.0000, type=EXTENDED
2022-12-03 22:59:53,731 - stpipe.Spec2Pipeline.srctype - INFO - source_id=48, stellarity=0.0000, type=EXTENDED
2022-12-03 22:59:53,732 - stpipe.Spec2Pipeline.srctype - INFO - source_id=49, stellarity=0.0000, type=EXTENDED
2022-12-03 22:59:53,733 - stpipe.Spec2Pipeline.srctype - INFO - source_id=50, stellarity=0.0000, type=EXTENDED
2022-12-03 22:59:53,734 - stpipe.Spec2Pipeline.srctype - INFO - source_id=51, stellarity=0.0000, type=EXTENDED
2022-12-03 22:59:53,735 - stpipe.Spec2Pipeline.srctype - INFO - source_id=52, stellarity=0.0000, type=EXTENDED
2022-12-03 22:59:53,736 - stpipe.Spec2Pipeline.srctype - INFO - source_id=55, stellarity=0.0000, type=EXTENDED
2022-12-03 22:59:53,737 - stpipe.Spec2Pipeline.srctype - INFO - source_id=65, stellarity=0.0000, type=EXTENDED
2022-12-03 22:59:53,739 - stpipe.Spec2Pipeline.srctype - INFO - source_id=66, stellarity=0.0000, type=EXTENDED
2022-12-03 22:59:53,740 - stpipe.Spec2Pipeline.srctype - INFO - source_id=68, stellarity=0.0000, type=EXTENDED
2022-12-03 22:59:53,741 - stpipe.Spec2Pipeline.srctype - INFO - source_id=56, stellarity=0.0000, type=EXTENDED
2022-12-03 22:59:53,742 - stpipe.Spec2Pipeline.srctype - INFO - source_id=57, stellarity=0.0000, type=EXTENDED
2022-12-03 22:59:53,743 - stpipe.Spec2Pipeline.srctype - INFO - source_id=58, stellarity=0.0000, type=EXTENDED
2022-12-03 22:59:53,744 - stpipe.Spec2Pipeline.srctype - INFO - source_id=59, stellarity=0.0000, type=EXTENDED
2022-12-03 22:59:53,745 - stpipe.Spec2Pipeline.srctype - INFO - source_id=60, stellarity=0.0000, type=EXTENDED
2022-12-03 22:59:53,746 - stpipe.Spec2Pipeline.srctype - INFO - source_id=61, stellarity=0.0000, type=EXTENDED
2022-12-03 22:59:53,747 - stpipe.Spec2Pipeline.srctype - INFO - source_id=62, stellarity=0.0000, type=EXTENDED
2022-12-03 22:59:53,749 - stpipe.Spec2Pipeline.srctype - INFO - source_id=63, stellarity=0.0000, type=EXTENDED
2022-12-03 22:59:53,750 - stpipe.Spec2Pipeline.srctype - INFO - source_id=64, stellarity=0.0000, type=EXTENDED
2022-12-03 22:59:53,751 - stpipe.Spec2Pipeline.srctype - INFO - source_id=67, stellarity=0.0000, type=EXTENDED
2022-12-03 22:59:53,753 - stpipe.Spec2Pipeline.srctype - INFO - Step srctype done
2022-12-03 22:59:54,054 - stpipe.Spec2Pipeline.master_background_mos - INFO - Step master_background_mos running with args (<MultiSlitModel from mos_g140m_line1_NRS1_uncal.fits>,).
2022-12-03 22:59:54,060 - stpipe.Spec2Pipeline.master_background_mos - INFO - Step master_background_mos parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'force_subtract': False, 'save_background': False, 'user_background': None, 'inverse': False, 'steps': {'flat_field': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False}, 'pathloss': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'inverse': False, 'source_type': None}, 'barshadow': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'inverse': False, 'source_type': None}, 'photom': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'inverse': False, 'source_type': None}}}
2022-12-03 22:59:54,068 - stpipe.Spec2Pipeline.master_background_mos - WARNING - No background slits available for creating master background. Skipping
2022-12-03 22:59:54,069 - stpipe.Spec2Pipeline.master_background_mos - INFO - Results used CRDS context: jwst_1019.pmap
2022-12-03 22:59:54,069 - stpipe.Spec2Pipeline.master_background_mos - INFO - Step master_background_mos done
2022-12-03 22:59:54,357 - stpipe.Spec2Pipeline.wavecorr - INFO - Step wavecorr running with args (<MultiSlitModel from mos_g140m_line1_NRS1_uncal.fits>,).
2022-12-03 22:59:54,358 - stpipe.Spec2Pipeline.wavecorr - INFO - Step wavecorr parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': ''}
2022-12-03 22:59:57,112 - stpipe.Spec2Pipeline.wavecorr - INFO - Using WAVECORR reference file /grp/crds/cache/references/jwst/jwst_nirspec_wavecorr_0004.asdf
2022-12-03 23:00:02,080 - stpipe.Spec2Pipeline.wavecorr - INFO - Detected a EXTENDED source type in slit 53
2022-12-03 23:00:02,082 - stpipe.Spec2Pipeline.wavecorr - INFO - Detected a EXTENDED source type in slit 54
2022-12-03 23:00:02,082 - stpipe.Spec2Pipeline.wavecorr - INFO - Detected a EXTENDED source type in slit 42
2022-12-03 23:00:02,082 - stpipe.Spec2Pipeline.wavecorr - INFO - Detected a EXTENDED source type in slit 43
2022-12-03 23:00:02,083 - stpipe.Spec2Pipeline.wavecorr - INFO - Detected a EXTENDED source type in slit 44
2022-12-03 23:00:02,084 - stpipe.Spec2Pipeline.wavecorr - INFO - Detected a EXTENDED source type in slit 45
2022-12-03 23:00:02,084 - stpipe.Spec2Pipeline.wavecorr - INFO - Detected a EXTENDED source type in slit 46
2022-12-03 23:00:02,085 - stpipe.Spec2Pipeline.wavecorr - INFO - Detected a EXTENDED source type in slit 47
2022-12-03 23:00:02,086 - stpipe.Spec2Pipeline.wavecorr - INFO - Detected a EXTENDED source type in slit 48
2022-12-03 23:00:02,086 - stpipe.Spec2Pipeline.wavecorr - INFO - Detected a EXTENDED source type in slit 49
2022-12-03 23:00:02,086 - stpipe.Spec2Pipeline.wavecorr - INFO - Detected a EXTENDED source type in slit 50
2022-12-03 23:00:02,087 - stpipe.Spec2Pipeline.wavecorr - INFO - Detected a EXTENDED source type in slit 51
2022-12-03 23:00:02,087 - stpipe.Spec2Pipeline.wavecorr - INFO - Detected a EXTENDED source type in slit 52
2022-12-03 23:00:02,088 - stpipe.Spec2Pipeline.wavecorr - INFO - Detected a EXTENDED source type in slit 55
2022-12-03 23:00:02,088 - stpipe.Spec2Pipeline.wavecorr - INFO - Detected a EXTENDED source type in slit 65
2022-12-03 23:00:02,089 - stpipe.Spec2Pipeline.wavecorr - INFO - Detected a EXTENDED source type in slit 66
2022-12-03 23:00:02,089 - stpipe.Spec2Pipeline.wavecorr - INFO - Detected a EXTENDED source type in slit 68
2022-12-03 23:00:02,089 - stpipe.Spec2Pipeline.wavecorr - INFO - Detected a EXTENDED source type in slit 56
2022-12-03 23:00:02,090 - stpipe.Spec2Pipeline.wavecorr - INFO - Detected a EXTENDED source type in slit 57
2022-12-03 23:00:02,091 - stpipe.Spec2Pipeline.wavecorr - INFO - Detected a EXTENDED source type in slit 58
2022-12-03 23:00:02,091 - stpipe.Spec2Pipeline.wavecorr - INFO - Detected a EXTENDED source type in slit 59
2022-12-03 23:00:02,092 - stpipe.Spec2Pipeline.wavecorr - INFO - Detected a EXTENDED source type in slit 60
2022-12-03 23:00:02,093 - stpipe.Spec2Pipeline.wavecorr - INFO - Detected a EXTENDED source type in slit 61
2022-12-03 23:00:02,093 - stpipe.Spec2Pipeline.wavecorr - INFO - Detected a EXTENDED source type in slit 62
2022-12-03 23:00:02,094 - stpipe.Spec2Pipeline.wavecorr - INFO - Detected a EXTENDED source type in slit 63
2022-12-03 23:00:02,094 - stpipe.Spec2Pipeline.wavecorr - INFO - Detected a EXTENDED source type in slit 64
2022-12-03 23:00:02,095 - stpipe.Spec2Pipeline.wavecorr - INFO - Detected a EXTENDED source type in slit 67
2022-12-03 23:00:02,100 - stpipe.Spec2Pipeline.wavecorr - INFO - Step wavecorr done
2022-12-03 23:00:02,770 - stpipe.Spec2Pipeline.flat_field - INFO - Step flat_field running with args (<MultiSlitModel from mos_g140m_line1_NRS1_uncal.fits>,).
2022-12-03 23:00:02,772 - stpipe.Spec2Pipeline.flat_field - INFO - Step flat_field parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'save_interpolated_flat': True, 'user_supplied_flat': None, 'inverse': False}
2022-12-03 23:00:32,662 - stpipe.Spec2Pipeline.flat_field - INFO - Working on slit 53
2022-12-03 23:00:33,471 - stpipe.Spec2Pipeline.flat_field - INFO - Working on slit 54
2022-12-03 23:00:34,276 - stpipe.Spec2Pipeline.flat_field - INFO - Working on slit 42
2022-12-03 23:00:34,474 - stpipe.Spec2Pipeline.flat_field - INFO - Working on slit 43
2022-12-03 23:00:34,732 - stpipe.Spec2Pipeline.flat_field - INFO - Working on slit 44
2022-12-03 23:00:34,989 - stpipe.Spec2Pipeline.flat_field - INFO - Working on slit 45
2022-12-03 23:00:35,328 - stpipe.Spec2Pipeline.flat_field - INFO - Working on slit 46
2022-12-03 23:00:35,736 - stpipe.Spec2Pipeline.flat_field - INFO - Working on slit 47
2022-12-03 23:00:36,184 - stpipe.Spec2Pipeline.flat_field - INFO - Working on slit 48
2022-12-03 23:00:36,629 - stpipe.Spec2Pipeline.flat_field - INFO - Working on slit 49
2022-12-03 23:00:37,129 - stpipe.Spec2Pipeline.flat_field - INFO - Working on slit 50
2022-12-03 23:00:37,656 - stpipe.Spec2Pipeline.flat_field - INFO - Working on slit 51
2022-12-03 23:00:38,182 - stpipe.Spec2Pipeline.flat_field - INFO - Working on slit 52
2022-12-03 23:00:38,759 - stpipe.Spec2Pipeline.flat_field - INFO - Working on slit 55
2022-12-03 23:00:40,310 - stpipe.Spec2Pipeline.flat_field - INFO - Working on slit 65
2022-12-03 23:00:42,486 - stpipe.Spec2Pipeline.flat_field - INFO - Working on slit 66
2022-12-03 23:00:45,072 - stpipe.Spec2Pipeline.flat_field - INFO - Working on slit 68
2022-12-03 23:00:47,260 - stpipe.Spec2Pipeline.flat_field - INFO - Working on slit 56
2022-12-03 23:00:49,003 - stpipe.Spec2Pipeline.flat_field - INFO - Working on slit 57
2022-12-03 23:00:50,883 - stpipe.Spec2Pipeline.flat_field - INFO - Working on slit 58
2022-12-03 23:00:52,845 - stpipe.Spec2Pipeline.flat_field - INFO - Working on slit 59
2022-12-03 23:00:54,892 - stpipe.Spec2Pipeline.flat_field - INFO - Working on slit 60
2022-12-03 23:00:56,985 - stpipe.Spec2Pipeline.flat_field - INFO - Working on slit 61
2022-12-03 23:00:59,100 - stpipe.Spec2Pipeline.flat_field - INFO - Working on slit 62
2022-12-03 23:01:01,255 - stpipe.Spec2Pipeline.flat_field - INFO - Working on slit 63
2022-12-03 23:01:03,287 - stpipe.Spec2Pipeline.flat_field - INFO - Working on slit 64
2022-12-03 23:01:05,431 - stpipe.Spec2Pipeline.flat_field - INFO - Working on slit 67
2022-12-03 23:01:15,984 - stpipe.Spec2Pipeline.flat_field - INFO - Saved model in mos_g140m_line1_NRS1_interpolatedflat.fits
2022-12-03 23:01:15,985 - stpipe.Spec2Pipeline.flat_field - INFO - Interpolated flat written to "mos_g140m_line1_NRS1_interpolatedflat.fits".
2022-12-03 23:01:15,992 - stpipe.Spec2Pipeline.flat_field - INFO - Step flat_field done
2022-12-03 23:01:16,553 - stpipe.Spec2Pipeline.pathloss - INFO - Step pathloss running with args (<MultiSlitModel from mos_g140m_line1_NRS1_uncal.fits>,).
2022-12-03 23:01:16,555 - stpipe.Spec2Pipeline.pathloss - INFO - Step pathloss parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'inverse': False, 'source_type': None}
2022-12-03 23:01:16,556 - stpipe.Spec2Pipeline.pathloss - INFO - Step skipped.
2022-12-03 23:01:16,559 - stpipe.Spec2Pipeline.pathloss - INFO - Step pathloss done
2022-12-03 23:01:16,925 - stpipe.Spec2Pipeline.barshadow - INFO - Step barshadow running with args (<MultiSlitModel from mos_g140m_line1_NRS1_uncal.fits>,).
2022-12-03 23:01:16,927 - stpipe.Spec2Pipeline.barshadow - INFO - Step barshadow parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'inverse': False, 'source_type': None}
2022-12-03 23:01:16,927 - stpipe.Spec2Pipeline.barshadow - INFO - Step skipped.
2022-12-03 23:01:16,930 - stpipe.Spec2Pipeline.barshadow - INFO - Step barshadow done
2022-12-03 23:01:17,253 - stpipe.Spec2Pipeline.photom - INFO - Step photom running with args (<MultiSlitModel from mos_g140m_line1_NRS1_uncal.fits>,).
2022-12-03 23:01:17,254 - stpipe.Spec2Pipeline.photom - INFO - Step photom parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'inverse': False, 'source_type': None}
2022-12-03 23:01:17,255 - stpipe.Spec2Pipeline.photom - INFO - Step skipped.
2022-12-03 23:01:17,257 - stpipe.Spec2Pipeline.photom - INFO - Step photom done
2022-12-03 23:01:17,581 - stpipe.Spec2Pipeline.resample_spec - INFO - Step resample_spec running with args (<MultiSlitModel from mos_g140m_line1_NRS1_cal.fits>,).
2022-12-03 23:01:17,583 - stpipe.Spec2Pipeline.resample_spec - INFO - Step resample_spec parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': 's2d', 'search_output_file': True, 'input_dir': '', 'pixfrac': 1.0, 'kernel': 'square', 'fillval': 'INDEF', 'weight_type': 'ivm', 'output_shape': None, 'crpix': None, 'crval': None, 'rotation': None, 'pixel_scale_ratio': 1.0, 'pixel_scale': None, 'single': False, 'blendheaders': True, 'allowed_memory': None, 'in_memory': True}
2022-12-03 23:01:17,583 - stpipe.Spec2Pipeline.resample_spec - INFO - Step skipped.
2022-12-03 23:01:17,586 - stpipe.Spec2Pipeline.resample_spec - INFO - Step resample_spec done
2022-12-03 23:01:17,869 - stpipe.Spec2Pipeline.extract_1d - INFO - Step extract_1d running with args (<MultiSlitModel from mos_g140m_line1_NRS1_cal.fits>,).
2022-12-03 23:01:17,871 - stpipe.Spec2Pipeline.extract_1d - INFO - Step extract_1d parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': 'x1d', 'search_output_file': True, 'input_dir': '', 'smoothing_length': None, 'bkg_fit': None, 'bkg_order': None, 'bkg_sigma_clip': 3.0, 'log_increment': 50, 'subtract_background': None, 'use_source_posn': None, 'center_xy': None, 'apply_apcorr': True, 'soss_threshold': 0.01, 'soss_n_os': 2, 'soss_transform': None, 'soss_tikfac': None, 'soss_width': 40.0, 'soss_bad_pix': 'model', 'soss_modelname': None}
2022-12-03 23:01:17,871 - stpipe.Spec2Pipeline.extract_1d - INFO - Step skipped.
2022-12-03 23:01:17,874 - stpipe.Spec2Pipeline.extract_1d - INFO - Step extract_1d done
2022-12-03 23:01:17,875 - stpipe.Spec2Pipeline - INFO - Finished processing product mos_g140m_line1_NRS1_uncal
2022-12-03 23:01:17,875 - stpipe.Spec2Pipeline - INFO - Ending calwebb_spec2
2022-12-03 23:01:17,875 - stpipe.Spec2Pipeline - INFO - Results used CRDS context: jwst_1019.pmap
2022-12-03 23:01:17,876 - stpipe.Spec2Pipeline - INFO - Step Spec2Pipeline done
Running flat field test for MOS...
Filename: mos_g140m_line1_NRS1_interpolatedflat.fits
No. Name Ver Type Cards Dimensions Format
0 PRIMARY 1 PrimaryHDU 268 ()
1 SCI 1 ImageHDU 14 (506, 10) float32
2 DQ 1 ImageHDU 11 (506, 10) int32 (rescales to uint32)
3 ERR 1 ImageHDU 9 (506, 10) float32
4 WAVELENGTH 1 ImageHDU 9 (506, 10) float32
5 SCI 2 ImageHDU 14 (506, 10) float32
6 DQ 2 ImageHDU 11 (506, 10) int32 (rescales to uint32)
7 ERR 2 ImageHDU 9 (506, 10) float32
8 WAVELENGTH 2 ImageHDU 9 (506, 10) float32
9 SCI 3 ImageHDU 14 (30, 9) float32
10 DQ 3 ImageHDU 11 (30, 9) int32 (rescales to uint32)
11 ERR 3 ImageHDU 9 (30, 9) float32
12 WAVELENGTH 3 ImageHDU 9 (30, 9) float32
13 SCI 4 ImageHDU 14 (78, 9) float32
14 DQ 4 ImageHDU 11 (78, 9) int32 (rescales to uint32)
15 ERR 4 ImageHDU 9 (78, 9) float32
16 WAVELENGTH 4 ImageHDU 9 (78, 9) float32
17 SCI 5 ImageHDU 14 (79, 9) float32
18 DQ 5 ImageHDU 11 (79, 9) int32 (rescales to uint32)
19 ERR 5 ImageHDU 9 (79, 9) float32
20 WAVELENGTH 5 ImageHDU 9 (79, 9) float32
21 SCI 6 ImageHDU 14 (140, 10) float32
22 DQ 6 ImageHDU 11 (140, 10) int32 (rescales to uint32)
23 ERR 6 ImageHDU 9 (140, 10) float32
24 WAVELENGTH 6 ImageHDU 9 (140, 10) float32
25 SCI 7 ImageHDU 14 (166, 10) float32
26 DQ 7 ImageHDU 11 (166, 10) int32 (rescales to uint32)
27 ERR 7 ImageHDU 9 (166, 10) float32
28 WAVELENGTH 7 ImageHDU 9 (166, 10) float32
29 SCI 8 ImageHDU 14 (233, 9) float32
30 DQ 8 ImageHDU 11 (233, 9) int32 (rescales to uint32)
31 ERR 8 ImageHDU 9 (233, 9) float32
32 WAVELENGTH 8 ImageHDU 9 (233, 9) float32
33 SCI 9 ImageHDU 14 (233, 9) float32
34 DQ 9 ImageHDU 11 (233, 9) int32 (rescales to uint32)
35 ERR 9 ImageHDU 9 (233, 9) float32
36 WAVELENGTH 9 ImageHDU 9 (233, 9) float32
37 SCI 10 ImageHDU 14 (257, 10) float32
38 DQ 10 ImageHDU 11 (257, 10) int32 (rescales to uint32)
39 ERR 10 ImageHDU 9 (257, 10) float32
40 WAVELENGTH 10 ImageHDU 9 (257, 10) float32
41 SCI 11 ImageHDU 14 (274, 10) float32
42 DQ 11 ImageHDU 11 (274, 10) int32 (rescales to uint32)
43 ERR 11 ImageHDU 9 (274, 10) float32
44 WAVELENGTH 11 ImageHDU 9 (274, 10) float32
45 SCI 12 ImageHDU 14 (289, 10) float32
46 DQ 12 ImageHDU 11 (289, 10) int32 (rescales to uint32)
47 ERR 12 ImageHDU 9 (289, 10) float32
48 WAVELENGTH 12 ImageHDU 9 (289, 10) float32
49 SCI 13 ImageHDU 14 (326, 10) float32
50 DQ 13 ImageHDU 11 (326, 10) int32 (rescales to uint32)
51 ERR 13 ImageHDU 9 (326, 10) float32
52 WAVELENGTH 13 ImageHDU 9 (326, 10) float32
53 SCI 14 ImageHDU 14 (1026, 14) float32
54 DQ 14 ImageHDU 11 (1026, 14) int32 (rescales to uint32)
55 ERR 14 ImageHDU 9 (1026, 14) float32
56 WAVELENGTH 14 ImageHDU 9 (1026, 14) float32
57 SCI 15 ImageHDU 14 (1466, 21) float32
58 DQ 15 ImageHDU 11 (1466, 21) int32 (rescales to uint32)
59 ERR 15 ImageHDU 9 (1466, 21) float32
60 WAVELENGTH 15 ImageHDU 9 (1466, 21) float32
61 SCI 16 ImageHDU 14 (1466, 21) float32
62 DQ 16 ImageHDU 11 (1466, 21) int32 (rescales to uint32)
63 ERR 16 ImageHDU 9 (1466, 21) float32
64 WAVELENGTH 16 ImageHDU 9 (1466, 21) float32
65 SCI 17 ImageHDU 14 (1467, 23) float32
66 DQ 17 ImageHDU 11 (1467, 23) int32 (rescales to uint32)
67 ERR 17 ImageHDU 9 (1467, 23) float32
68 WAVELENGTH 17 ImageHDU 9 (1467, 23) float32
69 SCI 18 ImageHDU 14 (1176, 14) float32
70 DQ 18 ImageHDU 11 (1176, 14) int32 (rescales to uint32)
71 ERR 18 ImageHDU 9 (1176, 14) float32
72 WAVELENGTH 18 ImageHDU 9 (1176, 14) float32
73 SCI 19 ImageHDU 14 (1243, 15) float32
74 DQ 19 ImageHDU 11 (1243, 15) int32 (rescales to uint32)
75 ERR 19 ImageHDU 9 (1243, 15) float32
76 WAVELENGTH 19 ImageHDU 9 (1243, 15) float32
77 SCI 20 ImageHDU 14 (1317, 16) float32
78 DQ 20 ImageHDU 11 (1317, 16) int32 (rescales to uint32)
79 ERR 20 ImageHDU 9 (1317, 16) float32
80 WAVELENGTH 20 ImageHDU 9 (1317, 16) float32
81 SCI 21 ImageHDU 14 (1390, 16) float32
82 DQ 21 ImageHDU 11 (1390, 16) int32 (rescales to uint32)
83 ERR 21 ImageHDU 9 (1390, 16) float32
84 WAVELENGTH 21 ImageHDU 9 (1390, 16) float32
85 SCI 22 ImageHDU 14 (1407, 17) float32
86 DQ 22 ImageHDU 11 (1407, 17) int32 (rescales to uint32)
87 ERR 22 ImageHDU 9 (1407, 17) float32
88 WAVELENGTH 22 ImageHDU 9 (1407, 17) float32
89 SCI 23 ImageHDU 14 (1428, 17) float32
90 DQ 23 ImageHDU 11 (1428, 17) int32 (rescales to uint32)
91 ERR 23 ImageHDU 9 (1428, 17) float32
92 WAVELENGTH 23 ImageHDU 9 (1428, 17) float32
93 SCI 24 ImageHDU 14 (1462, 18) float32
94 DQ 24 ImageHDU 11 (1462, 18) int32 (rescales to uint32)
95 ERR 24 ImageHDU 9 (1462, 18) float32
96 WAVELENGTH 24 ImageHDU 9 (1462, 18) float32
97 SCI 25 ImageHDU 14 (1461, 18) float32
98 DQ 25 ImageHDU 11 (1461, 18) int32 (rescales to uint32)
99 ERR 25 ImageHDU 9 (1461, 18) float32
100 WAVELENGTH 25 ImageHDU 9 (1461, 18) float32
101 SCI 26 ImageHDU 14 (1461, 18) float32
102 DQ 26 ImageHDU 11 (1461, 18) int32 (rescales to uint32)
103 ERR 26 ImageHDU 9 (1461, 18) float32
104 WAVELENGTH 26 ImageHDU 9 (1461, 18) float32
105 SCI 27 ImageHDU 14 (1461, 19) float32
106 DQ 27 ImageHDU 11 (1461, 19) int32 (rescales to uint32)
107 ERR 27 ImageHDU 9 (1461, 19) float32
108 WAVELENGTH 27 ImageHDU 9 (1461, 19) float32
109 ASDF 1 BinTableHDU 11 1R x 1C [2262015B]
flat_field_file --> Grating:G140M Filter:F100LP LAMP:LINE1
Using D-flat: /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/tmpc4g9b_04/nirspec_dflat_nrs1_f_01.03.fits
Using S-flat: /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/tmpc4g9b_04/nirspec_MOS_sflat_G140M_OPAQUE_FLAT1_nrs1_f_01.01.fits
Using F-flat: /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/tmpc4g9b_04/nirspec_MOS_fflat_F100LP_01.01.fits
Working with slit ID: 53 - which is 1 out of 27
Subwindow origin: px0=1543 py0=1317
silt_id='53' quad=1 row=330 col=144 slitlet_id='330_144'
Now looping through the pixels, this will take a while ...
Calculating statistics...
Absolute Flat Difference : mean = -5.786e-07 median = 1.294e-07 stdev = 2.252e-04
Maximum AbsoluteFlat Difference = 1.124e-03
Minimum AbsoluteFlat Difference = -1.066e-03
Percentage of pixels where median of absolute differences is greater than:
-> 1xtheshold = 56%
-> 3xtheshold = 15%
-> 5xtheshold = 4%
*** WARNING: More than 10% of pixels have a median value greater than 3xthreshold!
Making histogram plot for this slitlet...
*** Result of the test: PASSED
Working with slit ID: 54 - which is 2 out of 27
Subwindow origin: px0=1543 py0=1307
silt_id='54' quad=1 row=330 col=146 slitlet_id='330_146'
Now looping through the pixels, this will take a while ...
Calculating statistics...
Absolute Flat Difference : mean = -5.342e-06 median = -9.358e-07 stdev = 2.279e-04
Maximum AbsoluteFlat Difference = 1.021e-03
Minimum AbsoluteFlat Difference = -1.173e-03
Percentage of pixels where median of absolute differences is greater than:
-> 1xtheshold = 56%
-> 3xtheshold = 16%
-> 5xtheshold = 4%
*** WARNING: More than 10% of pixels have a median value greater than 3xthreshold!
Making histogram plot for this slitlet...
*** Result of the test: PASSED Working with slit ID: 42 - which is 3 out of 27 Subwindow origin: px0=2019 py0=547 silt_id='42' quad=2 row=138 col=56 slitlet_id='138_56' Now looping through the pixels, this will take a while ... Calculating statistics... * Unable to calculate statistics because difference array has all outlier values. Test will be set to FAILED and NO plots will be made. *** Result of the test: FAILED Working with slit ID: 43 - which is 4 out of 27 Subwindow origin: px0=1971 py0=416 silt_id='43' quad=2 row=155 col=82 slitlet_id='155_82' Now looping through the pixels, this will take a while ...
/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/nirspec_pipe_testing_tool/calwebb_spec2_pytests/auxiliary_code/flattest_mos.py:534: RuntimeWarning: invalid value encountered in divide sff = int_tab/(last_sfv_wav - first_sfv_wav)
Calculating statistics...
Absolute Flat Difference : mean = 5.415e-05 median = 6.258e-05 stdev = 3.413e-04
Maximum AbsoluteFlat Difference = 9.230e-04
Minimum AbsoluteFlat Difference = -7.970e-04
Percentage of pixels where median of absolute differences is greater than:
-> 1xtheshold = 81%
-> 3xtheshold = 37%
-> 5xtheshold = 16%
*** WARNING: More than 10% of pixels have a median value greater than 3xthreshold!
*** WARNING: More than 10% of pixels have a median value greater than 5xthreshold!
Making histogram plot for this slitlet...
*** Result of the test: PASSED
Working with slit ID: 44 - which is 5 out of 27
Subwindow origin: px0=1970 py0=406
silt_id='44' quad=2 row=155 col=84 slitlet_id='155_84'
Now looping through the pixels, this will take a while ...
Calculating statistics...
Absolute Flat Difference : mean = 5.742e-06 median = 1.744e-05 stdev = 3.107e-04
Maximum AbsoluteFlat Difference = 8.052e-04
Minimum AbsoluteFlat Difference = -7.523e-04
Percentage of pixels where median of absolute differences is greater than:
-> 1xtheshold = 76%
-> 3xtheshold = 31%
-> 5xtheshold = 11%
*** WARNING: More than 10% of pixels have a median value greater than 3xthreshold!
*** WARNING: More than 10% of pixels have a median value greater than 5xthreshold!
Making histogram plot for this slitlet...
*** Result of the test: PASSED
Working with slit ID: 45 - which is 6 out of 27
Subwindow origin: px0=1909 py0=532
silt_id='45' quad=2 row=180 col=59 slitlet_id='180_59'
Now looping through the pixels, this will take a while ...
Calculating statistics...
Absolute Flat Difference : mean = 1.878e-05 median = 2.345e-05 stdev = 2.800e-04
Maximum AbsoluteFlat Difference = 1.047e-03
Minimum AbsoluteFlat Difference = -9.995e-04
Percentage of pixels where median of absolute differences is greater than:
-> 1xtheshold = 61%
-> 3xtheshold = 21%
-> 5xtheshold = 9%
*** WARNING: More than 10% of pixels have a median value greater than 3xthreshold!
Making histogram plot for this slitlet...
*** Result of the test: PASSED
Working with slit ID: 46 - which is 7 out of 27
Subwindow origin: px0=1883 py0=204
silt_id='46' quad=2 row=186 col=124 slitlet_id='186_124'
Now looping through the pixels, this will take a while ...
Calculating statistics...
Absolute Flat Difference : mean = 3.705e-06 median = 5.363e-06 stdev = 3.000e-04
Maximum AbsoluteFlat Difference = 1.174e-03
Minimum AbsoluteFlat Difference = -1.037e-03
Percentage of pixels where median of absolute differences is greater than:
-> 1xtheshold = 65%
-> 3xtheshold = 27%
-> 5xtheshold = 11%
*** WARNING: More than 10% of pixels have a median value greater than 3xthreshold!
*** WARNING: More than 10% of pixels have a median value greater than 5xthreshold!
Making histogram plot for this slitlet...
*** Result of the test: PASSED
Working with slit ID: 47 - which is 8 out of 27
Subwindow origin: px0=1816 py0=568
silt_id='47' quad=2 row=216 col=52 slitlet_id='216_52'
Now looping through the pixels, this will take a while ...
Calculating statistics...
Absolute Flat Difference : mean = -1.343e-06 median = 1.016e-05 stdev = 2.878e-04
Maximum AbsoluteFlat Difference = 1.146e-03
Minimum AbsoluteFlat Difference = -1.130e-03
Percentage of pixels where median of absolute differences is greater than:
-> 1xtheshold = 61%
-> 3xtheshold = 26%
-> 5xtheshold = 9%
*** WARNING: More than 10% of pixels have a median value greater than 3xthreshold!
Making histogram plot for this slitlet...
*** Result of the test: PASSED
Working with slit ID: 48 - which is 9 out of 27
Subwindow origin: px0=1816 py0=563
silt_id='48' quad=2 row=216 col=53 slitlet_id='216_53'
Now looping through the pixels, this will take a while ...
Calculating statistics...
Absolute Flat Difference : mean = 6.557e-06 median = 2.008e-05 stdev = 2.900e-04
Maximum AbsoluteFlat Difference = 1.104e-03
Minimum AbsoluteFlat Difference = -1.135e-03
Percentage of pixels where median of absolute differences is greater than:
-> 1xtheshold = 62%
-> 3xtheshold = 26%
-> 5xtheshold = 9%
*** WARNING: More than 10% of pixels have a median value greater than 3xthreshold!
Making histogram plot for this slitlet...
*** Result of the test: PASSED
Working with slit ID: 49 - which is 10 out of 27
Subwindow origin: px0=1792 py0=633
silt_id='49' quad=2 row=226 col=39 slitlet_id='226_39'
Now looping through the pixels, this will take a while ...
Calculating statistics...
Absolute Flat Difference : mean = -3.177e-06 median = -2.601e-06 stdev = 2.701e-04
Maximum AbsoluteFlat Difference = 1.108e-03
Minimum AbsoluteFlat Difference = -1.063e-03
Percentage of pixels where median of absolute differences is greater than:
-> 1xtheshold = 63%
-> 3xtheshold = 24%
-> 5xtheshold = 8%
*** WARNING: More than 10% of pixels have a median value greater than 3xthreshold!
Making histogram plot for this slitlet...
*** Result of the test: PASSED
Working with slit ID: 50 - which is 11 out of 27
Subwindow origin: px0=1775 py0=240
silt_id='50' quad=2 row=228 col=117 slitlet_id='228_117'
Now looping through the pixels, this will take a while ...
Calculating statistics...
Absolute Flat Difference : mean = -2.784e-06 median = -8.765e-06 stdev = 2.722e-04
Maximum AbsoluteFlat Difference = 1.065e-03
Minimum AbsoluteFlat Difference = -9.732e-04
Percentage of pixels where median of absolute differences is greater than:
-> 1xtheshold = 62%
-> 3xtheshold = 23%
-> 5xtheshold = 8%
*** WARNING: More than 10% of pixels have a median value greater than 3xthreshold!
Making histogram plot for this slitlet...
*** Result of the test: PASSED
Working with slit ID: 51 - which is 12 out of 27
Subwindow origin: px0=1760 py0=432
silt_id='51' quad=2 row=236 col=79 slitlet_id='236_79'
Now looping through the pixels, this will take a while ...
Calculating statistics...
Absolute Flat Difference : mean = -8.998e-08 median = -4.022e-06 stdev = 2.721e-04
Maximum AbsoluteFlat Difference = 1.213e-03
Minimum AbsoluteFlat Difference = -1.149e-03
Percentage of pixels where median of absolute differences is greater than:
-> 1xtheshold = 62%
-> 3xtheshold = 23%
-> 5xtheshold = 8%
*** WARNING: More than 10% of pixels have a median value greater than 3xthreshold!
Making histogram plot for this slitlet...
*** Result of the test: PASSED
Working with slit ID: 52 - which is 13 out of 27
Subwindow origin: px0=1723 py0=805
silt_id='52' quad=2 row=255 col=5 slitlet_id='255_5'
Now looping through the pixels, this will take a while ...
Calculating statistics...
Absolute Flat Difference : mean = -1.975e-06 median = -3.531e-06 stdev = 2.557e-04
Maximum AbsoluteFlat Difference = 1.077e-03
Minimum AbsoluteFlat Difference = -9.978e-04
Percentage of pixels where median of absolute differences is greater than:
-> 1xtheshold = 60%
-> 3xtheshold = 21%
-> 5xtheshold = 7%
*** WARNING: More than 10% of pixels have a median value greater than 3xthreshold!
Making histogram plot for this slitlet...
*** Result of the test: PASSED
Working with slit ID: 55 - which is 14 out of 27
Subwindow origin: px0=1023 py0=1417
silt_id='55' quad=3 row=82 col=124 slitlet_id='82_124'
Now looping through the pixels, this will take a while ...
Calculating statistics...
Absolute Flat Difference : mean = 1.246e-07 median = -1.510e-06 stdev = 1.760e-04
Maximum AbsoluteFlat Difference = 9.046e-04
Minimum AbsoluteFlat Difference = -9.561e-04
Percentage of pixels where median of absolute differences is greater than:
-> 1xtheshold = 46%
-> 3xtheshold = 9%
-> 5xtheshold = 2%
Making histogram plot for this slitlet...
*** Result of the test: PASSED
Working with slit ID: 65 - which is 15 out of 27
Subwindow origin: px0=428 py0=1253
silt_id='65' quad=3 row=310 col=156 slitlet_id='310_156'
Now looping through the pixels, this will take a while ...
Calculating statistics...
Absolute Flat Difference : mean = 4.560e-07 median = -1.247e-08 stdev = 1.643e-04
Maximum AbsoluteFlat Difference = 1.021e-03
Minimum AbsoluteFlat Difference = -1.037e-03
Percentage of pixels where median of absolute differences is greater than:
-> 1xtheshold = 43%
-> 3xtheshold = 7%
-> 5xtheshold = 2%
Making histogram plot for this slitlet...
*** Result of the test: PASSED
Working with slit ID: 66 - which is 16 out of 27
Subwindow origin: px0=427 py0=1454
silt_id='66' quad=3 row=314 col=116 slitlet_id='314_116'
Now looping through the pixels, this will take a while ...
Calculating statistics...
Absolute Flat Difference : mean = 3.860e-07 median = 3.274e-07 stdev = 1.618e-04
Maximum AbsoluteFlat Difference = 1.204e-03
Minimum AbsoluteFlat Difference = -1.122e-03
Percentage of pixels where median of absolute differences is greater than:
-> 1xtheshold = 41%
-> 3xtheshold = 6%
-> 5xtheshold = 2%
Making histogram plot for this slitlet...
*** Result of the test: PASSED
Working with slit ID: 68 - which is 17 out of 27
Subwindow origin: px0=376 py0=1478
silt_id='68' quad=3 row=334 col=111 slitlet_id='334_111'
Now looping through the pixels, this will take a while ...
Calculating statistics...
Absolute Flat Difference : mean = -5.747e-08 median = -6.199e-07 stdev = 1.632e-04
Maximum AbsoluteFlat Difference = 1.258e-03
Minimum AbsoluteFlat Difference = -1.055e-03
Percentage of pixels where median of absolute differences is greater than:
-> 1xtheshold = 42%
-> 3xtheshold = 7%
-> 5xtheshold = 1%
Making histogram plot for this slitlet...
*** Result of the test: PASSED
Working with slit ID: 56 - which is 18 out of 27
Subwindow origin: px0=873 py0=770
silt_id='56' quad=4 row=130 col=12 slitlet_id='130_12'
Now looping through the pixels, this will take a while ...
Calculating statistics...
Absolute Flat Difference : mean = -5.345e-07 median = -2.733e-07 stdev = 1.763e-04
Maximum AbsoluteFlat Difference = 9.661e-04
Minimum AbsoluteFlat Difference = -9.489e-04
Percentage of pixels where median of absolute differences is greater than:
-> 1xtheshold = 46%
-> 3xtheshold = 9%
-> 5xtheshold = 2%
Making histogram plot for this slitlet...
*** Result of the test: PASSED
Working with slit ID: 57 - which is 19 out of 27
Subwindow origin: px0=806 py0=356
silt_id='57' quad=4 row=150 col=94 slitlet_id='150_94'
Now looping through the pixels, this will take a while ...
Calculating statistics...
Absolute Flat Difference : mean = -4.489e-07 median = -1.483e-06 stdev = 1.728e-04
Maximum AbsoluteFlat Difference = 1.017e-03
Minimum AbsoluteFlat Difference = -1.007e-03
Percentage of pixels where median of absolute differences is greater than:
-> 1xtheshold = 45%
-> 3xtheshold = 8%
-> 5xtheshold = 2%
Making histogram plot for this slitlet...
*** Result of the test: PASSED
Working with slit ID: 58 - which is 20 out of 27
Subwindow origin: px0=732 py0=260
silt_id='58' quad=4 row=177 col=113 slitlet_id='177_113'
Now looping through the pixels, this will take a while ...
Calculating statistics...
Absolute Flat Difference : mean = -1.653e-06 median = -1.659e-06 stdev = 1.748e-04
Maximum AbsoluteFlat Difference = 1.076e-03
Minimum AbsoluteFlat Difference = -1.117e-03
Percentage of pixels where median of absolute differences is greater than:
-> 1xtheshold = 45%
-> 3xtheshold = 8%
-> 5xtheshold = 2%
Making histogram plot for this slitlet...
*** Result of the test: PASSED
Working with slit ID: 59 - which is 21 out of 27
Subwindow origin: px0=659 py0=73
silt_id='59' quad=4 row=203 col=150 slitlet_id='203_150'
Now looping through the pixels, this will take a while ...
Calculating statistics...
Absolute Flat Difference : mean = 9.649e-07 median = 8.651e-07 stdev = 1.785e-04
Maximum AbsoluteFlat Difference = 1.217e-03
Minimum AbsoluteFlat Difference = -1.130e-03
Percentage of pixels where median of absolute differences is greater than:
-> 1xtheshold = 44%
-> 3xtheshold = 9%
-> 5xtheshold = 2%
Making histogram plot for this slitlet...
*** Result of the test: PASSED
Working with slit ID: 60 - which is 22 out of 27
Subwindow origin: px0=642 py0=683
silt_id='60' quad=4 row=218 col=29 slitlet_id='218_29'
Now looping through the pixels, this will take a while ...
Calculating statistics...
Absolute Flat Difference : mean = -1.193e-06 median = -1.810e-06 stdev = 1.762e-04
Maximum AbsoluteFlat Difference = 1.092e-03
Minimum AbsoluteFlat Difference = -1.207e-03
Percentage of pixels where median of absolute differences is greater than:
-> 1xtheshold = 44%
-> 3xtheshold = 8%
-> 5xtheshold = 2%
Making histogram plot for this slitlet...
*** Result of the test: PASSED
Working with slit ID: 61 - which is 23 out of 27
Subwindow origin: px0=621 py0=824
silt_id='61' quad=4 row=228 col=1 slitlet_id='228_1'
Now looping through the pixels, this will take a while ...
Calculating statistics...
Absolute Flat Difference : mean = -4.021e-08 median = -6.540e-07 stdev = 1.713e-04
Maximum AbsoluteFlat Difference = 1.143e-03
Minimum AbsoluteFlat Difference = -1.158e-03
Percentage of pixels where median of absolute differences is greater than:
-> 1xtheshold = 43%
-> 3xtheshold = 8%
-> 5xtheshold = 2%
Making histogram plot for this slitlet...
*** Result of the test: PASSED
Working with slit ID: 62 - which is 24 out of 27
Subwindow origin: px0=571 py0=511
silt_id='62' quad=4 row=243 col=63 slitlet_id='243_63'
Now looping through the pixels, this will take a while ...
Calculating statistics...
Absolute Flat Difference : mean = 1.583e-06 median = 3.665e-07 stdev = 1.724e-04
Maximum AbsoluteFlat Difference = 1.086e-03
Minimum AbsoluteFlat Difference = -1.236e-03
Percentage of pixels where median of absolute differences is greater than:
-> 1xtheshold = 44%
-> 3xtheshold = 8%
-> 5xtheshold = 2%
Making histogram plot for this slitlet...
*** Result of the test: PASSED
Working with slit ID: 63 - which is 25 out of 27
Subwindow origin: px0=455 py0=183
silt_id='63' quad=4 row=283 col=128 slitlet_id='283_128'
Now looping through the pixels, this will take a while ...
Calculating statistics...
Absolute Flat Difference : mean = 6.505e-07 median = -2.232e-07 stdev = 1.702e-04
Maximum AbsoluteFlat Difference = 1.107e-03
Minimum AbsoluteFlat Difference = -1.063e-03
Percentage of pixels where median of absolute differences is greater than:
-> 1xtheshold = 45%
-> 3xtheshold = 8%
-> 5xtheshold = 2%
Making histogram plot for this slitlet...
*** Result of the test: PASSED
Working with slit ID: 64 - which is 26 out of 27
Subwindow origin: px0=455 py0=178
silt_id='64' quad=4 row=283 col=129 slitlet_id='283_129'
Now looping through the pixels, this will take a while ...
Calculating statistics...
Absolute Flat Difference : mean = 8.818e-07 median = 1.250e-06 stdev = 1.676e-04
Maximum AbsoluteFlat Difference = 1.034e-03
Minimum AbsoluteFlat Difference = -1.052e-03
Percentage of pixels where median of absolute differences is greater than:
-> 1xtheshold = 42%
-> 3xtheshold = 7%
-> 5xtheshold = 2%
Making histogram plot for this slitlet...
*** Result of the test: PASSED
Working with slit ID: 67 - which is 27 out of 27
Subwindow origin: px0=329 py0=132
silt_id='67' quad=4 row=331 col=138 slitlet_id='331_138'
Now looping through the pixels, this will take a while ...
Calculating statistics...
Absolute Flat Difference : mean = 3.744e-07 median = 4.861e-07 stdev = 1.736e-04
Maximum AbsoluteFlat Difference = 9.740e-04
Minimum AbsoluteFlat Difference = -1.157e-03
Percentage of pixels where median of absolute differences is greater than:
-> 1xtheshold = 45%
-> 3xtheshold = 8%
-> 5xtheshold = 2%
Making histogram plot for this slitlet...
*** Result of the test: PASSED
*** Final result for flat_field test will be reported as FAILED ***
('* Script flattest_mos.py took ', '2.2413767337799073 minutes to finish.')
Did flat_field for mos_g140m_f100lp validation test passed? One or more slitlets FAILED flat_field test.
Closing file: popenfile(path='/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/tmpc4g9b_04/nirspec_dflat_nrs1_f_01.03.fits', fd=56, position=680480640, mode='r', flags=557056)
Closing file: popenfile(path='/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/tmpc4g9b_04/nirspec_MOS_sflat_G140M_OPAQUE_FLAT1_nrs1_f_01.01.fits', fd=57, position=1006715520, mode='r', flags=557056)
Closing file: popenfile(path='/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/tmpc4g9b_04/nirspec_MOS_fflat_F100LP_01.01.fits', fd=58, position=299989440, mode='r', flags=557056)
Closing file: popenfile(path='/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/tmpc4g9b_04/V8460001000101_msa.fits', fd=59, position=512640, mode='r', flags=557056)
Closing file: popenfile(path='/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/tmpc4g9b_04/mos_g140m_line1_NRS1_interpolatedflat.fits', fd=60, position=6082560, mode='r', flags=557056)
Testing files for detector: nrs2
Working with uncal_file: /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/tmpc4g9b_04/mos_g140m_line1_NRS2_uncal.fits
Filter = F100LP
Running the detector1 pipeline...
2022-12-03 23:03:44,990 - stpipe - INFO - PARS-DETECTOR1PIPELINE parameters found: /grp/crds/cache/references/jwst/jwst_nirspec_pars-detector1pipeline_0004.asdf
2022-12-03 23:03:45,024 - stpipe.Detector1Pipeline - INFO - Detector1Pipeline instance created.
2022-12-03 23:03:45,026 - stpipe.Detector1Pipeline.group_scale - INFO - GroupScaleStep instance created.
2022-12-03 23:03:45,027 - stpipe.Detector1Pipeline.dq_init - INFO - DQInitStep instance created.
2022-12-03 23:03:45,028 - stpipe.Detector1Pipeline.saturation - INFO - SaturationStep instance created.
2022-12-03 23:03:45,029 - stpipe.Detector1Pipeline.ipc - INFO - IPCStep instance created.
2022-12-03 23:03:45,030 - stpipe.Detector1Pipeline.superbias - INFO - SuperBiasStep instance created.
2022-12-03 23:03:45,031 - stpipe.Detector1Pipeline.refpix - INFO - RefPixStep instance created.
2022-12-03 23:03:45,032 - stpipe.Detector1Pipeline.rscd - INFO - RscdStep instance created.
2022-12-03 23:03:45,033 - stpipe.Detector1Pipeline.firstframe - INFO - FirstFrameStep instance created.
2022-12-03 23:03:45,034 - stpipe.Detector1Pipeline.lastframe - INFO - LastFrameStep instance created.
2022-12-03 23:03:45,035 - stpipe.Detector1Pipeline.linearity - INFO - LinearityStep instance created.
2022-12-03 23:03:45,037 - stpipe.Detector1Pipeline.dark_current - INFO - DarkCurrentStep instance created.
2022-12-03 23:03:45,039 - stpipe.Detector1Pipeline.reset - INFO - ResetStep instance created.
2022-12-03 23:03:45,040 - stpipe.Detector1Pipeline.persistence - INFO - PersistenceStep instance created.
2022-12-03 23:03:45,041 - stpipe.Detector1Pipeline.jump - INFO - JumpStep instance created.
2022-12-03 23:03:45,042 - stpipe.Detector1Pipeline.ramp_fit - INFO - RampFitStep instance created.
2022-12-03 23:03:45,043 - stpipe.Detector1Pipeline.gain_scale - INFO - GainScaleStep instance created.
2022-12-03 23:03:45,459 - stpipe.Detector1Pipeline - INFO - Step Detector1Pipeline running with args ('/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/tmpc4g9b_04/mos_g140m_line1_NRS2_uncal.fits',).
2022-12-03 23:03:45,470 - stpipe.Detector1Pipeline - INFO - Step Detector1Pipeline parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'save_calibrated_ramp': False, 'steps': {'group_scale': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': ''}, 'dq_init': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': ''}, 'saturation': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'n_pix_grow_sat': 1}, 'ipc': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': ''}, 'superbias': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': ''}, 'refpix': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'odd_even_columns': True, 'use_side_ref_pixels': True, 'side_smoothing_length': 11, 'side_gain': 1.0, 'odd_even_rows': True}, 'rscd': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'type': 'baseline'}, 'firstframe': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': ''}, 'lastframe': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': ''}, 'linearity': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': ''}, 'dark_current': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'dark_output': None}, 'reset': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': ''}, 'persistence': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'input_trapsfilled': '', 'flag_pers_cutoff': 40.0, 'save_persistence': False, 'save_trapsfilled': True}, 'jump': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'rejection_threshold': 4.0, 'three_group_rejection_threshold': 6.0, 'four_group_rejection_threshold': 5.0, 'maximum_cores': 'none', 'flag_4_neighbors': True, 'max_jump_to_flag_neighbors': 1000.0, 'min_jump_to_flag_neighbors': 10.0, 'after_jump_flag_dn1': 0.0, 'after_jump_flag_time1': 0.0, 'after_jump_flag_dn2': 0.0, 'after_jump_flag_time2': 0.0, 'min_sat_area': 1.0, 'min_jump_area': 5.0, 'expand_factor': 2.0, 'use_ellipses': False, 'sat_required_snowball': True, 'expand_large_events': False}, 'ramp_fit': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'int_name': '', 'save_opt': False, 'opt_name': '', 'suppress_one_group': True, 'maximum_cores': 'none'}, 'gain_scale': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': ''}}}
2022-12-03 23:03:45,643 - stpipe.Detector1Pipeline - INFO - Prefetching reference files for dataset: 'mos_g140m_line1_NRS2_uncal.fits' reftypes = ['dark', 'gain', 'linearity', 'mask', 'persat', 'readnoise', 'refpix', 'reset', 'rscd', 'saturation', 'superbias', 'trapdensity', 'trappars']
2022-12-03 23:03:45,663 - stpipe.Detector1Pipeline - INFO - Prefetch for DARK reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_dark_0143.fits'.
2022-12-03 23:03:45,665 - stpipe.Detector1Pipeline - INFO - Prefetch for GAIN reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_gain_0018.fits'.
2022-12-03 23:03:45,669 - stpipe.Detector1Pipeline - INFO - Prefetch for LINEARITY reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_linearity_0020.fits'.
2022-12-03 23:03:45,671 - stpipe.Detector1Pipeline - INFO - Prefetch for MASK reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_mask_0025.fits'.
2022-12-03 23:03:45,673 - stpipe.Detector1Pipeline - INFO - Prefetch for PERSAT reference file is 'N/A'.
2022-12-03 23:03:45,673 - stpipe.Detector1Pipeline - INFO - Prefetch for READNOISE reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_readnoise_0016.fits'.
2022-12-03 23:03:45,675 - stpipe.Detector1Pipeline - INFO - Prefetch for REFPIX reference file is 'N/A'.
2022-12-03 23:03:45,675 - stpipe.Detector1Pipeline - INFO - Prefetch for RESET reference file is 'N/A'.
2022-12-03 23:03:45,675 - stpipe.Detector1Pipeline - INFO - Prefetch for RSCD reference file is 'N/A'.
2022-12-03 23:03:45,675 - stpipe.Detector1Pipeline - INFO - Prefetch for SATURATION reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_saturation_0022.fits'.
2022-12-03 23:03:45,679 - stpipe.Detector1Pipeline - INFO - Prefetch for SUPERBIAS reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_superbias_0104.fits'.
2022-12-03 23:03:45,683 - stpipe.Detector1Pipeline - INFO - Prefetch for TRAPDENSITY reference file is 'N/A'.
2022-12-03 23:03:45,683 - stpipe.Detector1Pipeline - INFO - Prefetch for TRAPPARS reference file is 'N/A'.
2022-12-03 23:03:45,683 - stpipe.Detector1Pipeline - INFO - Starting calwebb_detector1 ...
2022-12-03 23:03:46,189 - stpipe.Detector1Pipeline.group_scale - INFO - Step group_scale running with args (<RampModel(1, 6, 2048, 2048) from mos_g140m_line1_NRS2_uncal.fits>,).
2022-12-03 23:03:46,190 - stpipe.Detector1Pipeline.group_scale - INFO - Step group_scale parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/tmpc4g9b_04'}
2022-12-03 23:03:46,316 - stpipe.Detector1Pipeline.group_scale - INFO - NFRAMES and FRMDIVSR are equal; correction not needed
2022-12-03 23:03:46,316 - stpipe.Detector1Pipeline.group_scale - INFO - Step will be skipped
2022-12-03 23:03:46,319 - stpipe.Detector1Pipeline.group_scale - INFO - Step group_scale done
2022-12-03 23:03:46,619 - stpipe.Detector1Pipeline.dq_init - INFO - Step dq_init running with args (<RampModel(1, 6, 2048, 2048) from mos_g140m_line1_NRS2_uncal.fits>,).
2022-12-03 23:03:46,620 - stpipe.Detector1Pipeline.dq_init - INFO - Step dq_init parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/tmpc4g9b_04'}
2022-12-03 23:03:46,646 - stpipe.Detector1Pipeline.dq_init - INFO - Using MASK reference file /grp/crds/cache/references/jwst/jwst_nirspec_mask_0025.fits
2022-12-03 23:03:47,530 - stpipe.Detector1Pipeline.dq_init - INFO - Step dq_init done
2022-12-03 23:03:47,831 - stpipe.Detector1Pipeline.saturation - INFO - Step saturation running with args (<RampModel(1, 6, 2048, 2048) from mos_g140m_line1_NRS2_uncal.fits>,).
2022-12-03 23:03:47,832 - stpipe.Detector1Pipeline.saturation - INFO - Step saturation parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/tmpc4g9b_04', 'n_pix_grow_sat': 1}
2022-12-03 23:03:47,856 - stpipe.Detector1Pipeline.saturation - INFO - Using SATURATION reference file /grp/crds/cache/references/jwst/jwst_nirspec_saturation_0022.fits
2022-12-03 23:03:50,784 - stpipe.Detector1Pipeline.saturation - INFO - Detected 123449 saturated pixels
2022-12-03 23:03:50,811 - stpipe.Detector1Pipeline.saturation - INFO - Detected 0 A/D floor pixels
2022-12-03 23:03:50,824 - stpipe.Detector1Pipeline.saturation - INFO - Step saturation done
2022-12-03 23:03:51,123 - stpipe.Detector1Pipeline.ipc - INFO - Step ipc running with args (<RampModel(1, 6, 2048, 2048) from mos_g140m_line1_NRS2_uncal.fits>,).
2022-12-03 23:03:51,125 - stpipe.Detector1Pipeline.ipc - INFO - Step ipc parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/tmpc4g9b_04'}
2022-12-03 23:03:51,125 - stpipe.Detector1Pipeline.ipc - INFO - Step skipped.
2022-12-03 23:03:51,128 - stpipe.Detector1Pipeline.ipc - INFO - Step ipc done
2022-12-03 23:03:51,422 - stpipe.Detector1Pipeline.superbias - INFO - Step superbias running with args (<RampModel(1, 6, 2048, 2048) from mos_g140m_line1_NRS2_uncal.fits>,).
2022-12-03 23:03:51,423 - stpipe.Detector1Pipeline.superbias - INFO - Step superbias parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/tmpc4g9b_04'}
2022-12-03 23:03:51,449 - stpipe.Detector1Pipeline.superbias - INFO - Using SUPERBIAS reference file /grp/crds/cache/references/jwst/jwst_nirspec_superbias_0104.fits
2022-12-03 23:03:55,194 - stpipe.Detector1Pipeline.superbias - INFO - Step superbias done
2022-12-03 23:03:55,496 - stpipe.Detector1Pipeline.refpix - INFO - Step refpix running with args (<RampModel(1, 6, 2048, 2048) from mos_g140m_line1_NRS2_uncal.fits>,).
2022-12-03 23:03:55,498 - stpipe.Detector1Pipeline.refpix - INFO - Step refpix parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/tmpc4g9b_04', 'odd_even_columns': True, 'use_side_ref_pixels': True, 'side_smoothing_length': 11, 'side_gain': 1.0, 'odd_even_rows': True}
2022-12-03 23:03:55,631 - stpipe.Detector1Pipeline.refpix - INFO - NIR full frame data
2022-12-03 23:03:55,632 - stpipe.Detector1Pipeline.refpix - INFO - The following parameters are valid for this mode:
2022-12-03 23:03:55,632 - stpipe.Detector1Pipeline.refpix - INFO - use_side_ref_pixels = True
2022-12-03 23:03:55,633 - stpipe.Detector1Pipeline.refpix - INFO - odd_even_columns = True
2022-12-03 23:03:55,633 - stpipe.Detector1Pipeline.refpix - INFO - side_smoothing_length = 11
2022-12-03 23:03:55,633 - stpipe.Detector1Pipeline.refpix - INFO - side_gain = 1.0
2022-12-03 23:03:55,634 - stpipe.Detector1Pipeline.refpix - INFO - The following parameter is not applicable and is ignored:
2022-12-03 23:03:55,634 - stpipe.Detector1Pipeline.refpix - INFO - odd_even_rows = False
2022-12-03 23:03:58,179 - stpipe.Detector1Pipeline.refpix - INFO - Step refpix done
2022-12-03 23:03:58,471 - stpipe.Detector1Pipeline.linearity - INFO - Step linearity running with args (<RampModel(1, 6, 2048, 2048) from mos_g140m_line1_NRS2_uncal.fits>,).
2022-12-03 23:03:58,472 - stpipe.Detector1Pipeline.linearity - INFO - Step linearity parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/tmpc4g9b_04'}
2022-12-03 23:03:58,501 - stpipe.Detector1Pipeline.linearity - INFO - Using Linearity reference file /grp/crds/cache/references/jwst/jwst_nirspec_linearity_0020.fits
2022-12-03 23:04:06,244 - stpipe.Detector1Pipeline.linearity - INFO - Step linearity done
2022-12-03 23:04:06,544 - stpipe.Detector1Pipeline.dark_current - INFO - Step dark_current running with args (<RampModel(1, 6, 2048, 2048) from mos_g140m_line1_NRS2_uncal.fits>,).
2022-12-03 23:04:06,545 - stpipe.Detector1Pipeline.dark_current - INFO - Step dark_current parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/tmpc4g9b_04', 'dark_output': None}
2022-12-03 23:04:06,573 - stpipe.Detector1Pipeline.dark_current - INFO - Using DARK reference file /grp/crds/cache/references/jwst/jwst_nirspec_dark_0143.fits
2022-12-03 23:04:11,532 - stpipe.Detector1Pipeline.dark_current - INFO - Science data nints=1, ngroups=6, nframes=1, groupgap=0
2022-12-03 23:04:11,532 - stpipe.Detector1Pipeline.dark_current - INFO - Dark data nints=1, ngroups=10, nframes=1, groupgap=0
2022-12-03 23:04:11,825 - stpipe.Detector1Pipeline.dark_current - INFO - Step dark_current done
2022-12-03 23:04:12,128 - stpipe.Detector1Pipeline.jump - INFO - Step jump running with args (<RampModel(1, 6, 2048, 2048) from mos_g140m_line1_NRS2_uncal.fits>,).
2022-12-03 23:04:12,130 - stpipe.Detector1Pipeline.jump - INFO - Step jump parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/tmpc4g9b_04', 'rejection_threshold': 4.0, 'three_group_rejection_threshold': 6.0, 'four_group_rejection_threshold': 5.0, 'maximum_cores': 'none', 'flag_4_neighbors': True, 'max_jump_to_flag_neighbors': 1000.0, 'min_jump_to_flag_neighbors': 10.0, 'after_jump_flag_dn1': 0.0, 'after_jump_flag_time1': 0.0, 'after_jump_flag_dn2': 0.0, 'after_jump_flag_time2': 0.0, 'min_sat_area': 1.0, 'min_jump_area': 5.0, 'expand_factor': 2.0, 'use_ellipses': False, 'sat_required_snowball': True, 'expand_large_events': False}
2022-12-03 23:04:12,140 - stpipe.Detector1Pipeline.jump - INFO - CR rejection threshold = 4 sigma
2022-12-03 23:04:12,155 - stpipe.Detector1Pipeline.jump - INFO - Using GAIN reference file: /grp/crds/cache/references/jwst/jwst_nirspec_gain_0018.fits
2022-12-03 23:04:13,227 - stpipe.Detector1Pipeline.jump - INFO - Using READNOISE reference file: /grp/crds/cache/references/jwst/jwst_nirspec_readnoise_0016.fits
2022-12-03 23:04:15,413 - stpipe.Detector1Pipeline.jump - INFO - Executing two-point difference method
2022-12-03 23:04:15,471 - stpipe.Detector1Pipeline.jump - INFO - Working on integration 1:
/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/stcal/jump/twopoint_difference.py:154: RuntimeWarning: All-NaN slice encountered
max_ratio = np.nanmax(ratio, axis=0)
2022-12-03 23:04:17,737 - stpipe.Detector1Pipeline.jump - INFO - From highest outlier, two-point found 51081 pixels with at least one CR from five or more groups.
2022-12-03 23:04:28,183 - stpipe.Detector1Pipeline.jump - INFO - Total elapsed time = 12.7686 sec
/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/stcal/jump/jump.py:302: RuntimeWarning: invalid value encountered in divide
data /= gain_2d
/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/stcal/jump/jump.py:303: RuntimeWarning: invalid value encountered in divide
err /= gain_2d
/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/stcal/jump/jump.py:304: RuntimeWarning: invalid value encountered in divide
readnoise_2d /= gain_2d
2022-12-03 23:04:28,258 - stpipe.Detector1Pipeline.jump - INFO - The execution time in seconds: 16.117737
2022-12-03 23:04:28,264 - stpipe.Detector1Pipeline.jump - INFO - Step jump done
2022-12-03 23:04:28,590 - stpipe.Detector1Pipeline.ramp_fit - INFO - Step ramp_fit running with args (<RampModel(1, 6, 2048, 2048) from mos_g140m_line1_NRS2_uncal.fits>,).
2022-12-03 23:04:28,592 - stpipe.Detector1Pipeline.ramp_fit - INFO - Step ramp_fit parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/tmpc4g9b_04', 'int_name': '', 'save_opt': False, 'opt_name': '', 'suppress_one_group': True, 'maximum_cores': 'none'}
2022-12-03 23:04:28,630 - stpipe.Detector1Pipeline.ramp_fit - INFO - Using READNOISE reference file: /grp/crds/cache/references/jwst/jwst_nirspec_readnoise_0016.fits
2022-12-03 23:04:28,631 - stpipe.Detector1Pipeline.ramp_fit - INFO - Using GAIN reference file: /grp/crds/cache/references/jwst/jwst_nirspec_gain_0018.fits
2022-12-03 23:04:28,750 - stpipe.Detector1Pipeline.ramp_fit - INFO - Using algorithm = ols
2022-12-03 23:04:28,751 - stpipe.Detector1Pipeline.ramp_fit - INFO - Using weighting = optimal
/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/stcal/ramp_fitting/ols_fit.py:1089: RuntimeWarning: invalid value encountered in multiply
var_p4[num_int, :, :, :] *= (segs_4[num_int, :, :, :] > 0)
2022-12-03 23:04:54,506 - stpipe.Detector1Pipeline.ramp_fit - INFO - Number of groups per integration: 6
2022-12-03 23:04:54,506 - stpipe.Detector1Pipeline.ramp_fit - INFO - Number of integrations: 1
2022-12-03 23:04:54,669 - stpipe.Detector1Pipeline.ramp_fit - INFO - Step ramp_fit done
2022-12-03 23:04:54,975 - stpipe.Detector1Pipeline.gain_scale - INFO - Step gain_scale running with args (<ImageModel(2048, 2048) from mos_g140m_line1_NRS2_uncal.fits>,).
2022-12-03 23:04:54,976 - stpipe.Detector1Pipeline.gain_scale - INFO - Step gain_scale parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': 'gain_scale', 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/tmpc4g9b_04'}
2022-12-03 23:04:55,057 - stpipe.Detector1Pipeline.gain_scale - INFO - GAINFACT not found in gain reference file
2022-12-03 23:04:55,058 - stpipe.Detector1Pipeline.gain_scale - INFO - Step will be skipped
2022-12-03 23:04:55,062 - stpipe.Detector1Pipeline.gain_scale - INFO - Step gain_scale done
2022-12-03 23:04:55,361 - stpipe.Detector1Pipeline.gain_scale - INFO - Step gain_scale running with args (<CubeModel(1, 2048, 2048) from mos_g140m_line1_NRS2_uncal.fits>,).
2022-12-03 23:04:55,363 - stpipe.Detector1Pipeline.gain_scale - INFO - Step gain_scale parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': 'gain_scaleints', 'search_output_file': True, 'input_dir': '/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/tmpc4g9b_04'}
2022-12-03 23:04:55,439 - stpipe.Detector1Pipeline.gain_scale - INFO - GAINFACT not found in gain reference file
2022-12-03 23:04:55,440 - stpipe.Detector1Pipeline.gain_scale - INFO - Step will be skipped
2022-12-03 23:04:55,445 - stpipe.Detector1Pipeline.gain_scale - INFO - Step gain_scale done
2022-12-03 23:04:55,445 - stpipe.Detector1Pipeline - INFO - ... ending calwebb_detector1
2022-12-03 23:04:55,446 - stpipe.Detector1Pipeline - INFO - Results used CRDS context: jwst_1019.pmap
2022-12-03 23:04:55,446 - stpipe.Detector1Pipeline - INFO - Step Detector1Pipeline done
2022-12-03 23:04:55,473 - CRDS - ERROR - Error determining best reference for 'pars-residualfringestep' = Unknown reference type 'pars-residualfringestep'
2022-12-03 23:04:55,491 - stpipe.Spec2Pipeline - INFO - Spec2Pipeline instance created.
2022-12-03 23:04:55,493 - stpipe.Spec2Pipeline.bkg_subtract - INFO - BackgroundStep instance created.
2022-12-03 23:04:55,494 - stpipe.Spec2Pipeline.assign_wcs - INFO - AssignWcsStep instance created.
2022-12-03 23:04:55,495 - stpipe.Spec2Pipeline.imprint_subtract - INFO - ImprintStep instance created.
2022-12-03 23:04:55,496 - stpipe.Spec2Pipeline.msa_flagging - INFO - MSAFlagOpenStep instance created.
2022-12-03 23:04:55,497 - stpipe.Spec2Pipeline.extract_2d - INFO - Extract2dStep instance created.
2022-12-03 23:04:55,500 - stpipe.Spec2Pipeline.master_background_mos - INFO - MasterBackgroundMosStep instance created.
2022-12-03 23:04:55,501 - stpipe.Spec2Pipeline.master_background_mos.flat_field - INFO - FlatFieldStep instance created.
2022-12-03 23:04:55,502 - stpipe.Spec2Pipeline.master_background_mos.pathloss - INFO - PathLossStep instance created.
2022-12-03 23:04:55,503 - stpipe.Spec2Pipeline.master_background_mos.barshadow - INFO - BarShadowStep instance created.
2022-12-03 23:04:55,504 - stpipe.Spec2Pipeline.master_background_mos.photom - INFO - PhotomStep instance created.
2022-12-03 23:04:55,505 - stpipe.Spec2Pipeline.wavecorr - INFO - WavecorrStep instance created.
2022-12-03 23:04:55,506 - stpipe.Spec2Pipeline.flat_field - INFO - FlatFieldStep instance created.
2022-12-03 23:04:55,507 - stpipe.Spec2Pipeline.srctype - INFO - SourceTypeStep instance created.
2022-12-03 23:04:55,508 - stpipe.Spec2Pipeline.straylight - INFO - StraylightStep instance created.
2022-12-03 23:04:55,509 - stpipe.Spec2Pipeline.fringe - INFO - FringeStep instance created.
2022-12-03 23:04:55,510 - stpipe.Spec2Pipeline.residual_fringe - INFO - ResidualFringeStep instance created.
2022-12-03 23:04:55,512 - stpipe.Spec2Pipeline.pathloss - INFO - PathLossStep instance created.
2022-12-03 23:04:55,513 - stpipe.Spec2Pipeline.barshadow - INFO - BarShadowStep instance created.
2022-12-03 23:04:55,514 - stpipe.Spec2Pipeline.wfss_contam - INFO - WfssContamStep instance created.
2022-12-03 23:04:55,515 - stpipe.Spec2Pipeline.photom - INFO - PhotomStep instance created.
2022-12-03 23:04:55,518 - stpipe.Spec2Pipeline.resample_spec - INFO - ResampleSpecStep instance created.
2022-12-03 23:04:55,520 - stpipe.Spec2Pipeline.cube_build - INFO - CubeBuildStep instance created.
2022-12-03 23:04:55,521 - stpipe.Spec2Pipeline.extract_1d - INFO - Extract1dStep instance created.
2022-12-03 23:04:55,815 - stpipe.Spec2Pipeline - INFO - Step Spec2Pipeline running with args (<ImageModel(2048, 2048) from mos_g140m_line1_NRS2_uncal.fits>,).
Running the spec2 pipeline...
2022-12-03 23:04:55,830 - stpipe.Spec2Pipeline - INFO - Step Spec2Pipeline parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'save_bsub': False, 'fail_on_exception': True, 'save_wfss_esec': False, 'steps': {'bkg_subtract': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'save_combined_background': False, 'sigma': 3.0, 'maxiters': None, 'wfss_mmag_extract': None}, 'assign_wcs': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'sip_approx': True, 'sip_max_pix_error': 0.1, 'sip_degree': None, 'sip_max_inv_pix_error': 0.1, 'sip_inv_degree': None, 'sip_npoints': 12, 'slit_y_low': -0.55, 'slit_y_high': 0.55}, 'imprint_subtract': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': ''}, 'msa_flagging': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': ''}, 'extract_2d': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'slit_name': None, 'extract_orders': None, 'grism_objects': None, 'tsgrism_extract_height': None, 'wfss_extract_half_height': 5, 'wfss_mmag_extract': None, 'wfss_nbright': 1000}, 'master_background_mos': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'force_subtract': False, 'save_background': False, 'user_background': None, 'inverse': False, 'steps': {'flat_field': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False}, 'pathloss': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'inverse': False, 'source_type': None}, 'barshadow': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'inverse': False, 'source_type': None}, 'photom': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'inverse': False, 'source_type': None}}}, 'wavecorr': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': ''}, 'flat_field': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'save_interpolated_flat': True, 'user_supplied_flat': None, 'inverse': False}, 'srctype': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'source_type': None}, 'straylight': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': ''}, 'fringe': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': ''}, 'residual_fringe': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': 'residual_fringe', 'search_output_file': False, 'input_dir': '', 'save_intermediate_results': False, 'ignore_region_min': None, 'ignore_region_max': None}, 'pathloss': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'inverse': False, 'source_type': None}, 'barshadow': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'inverse': False, 'source_type': None}, 'wfss_contam': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'save_simulated_image': False, 'save_contam_images': False, 'maximum_cores': 'none'}, 'photom': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'inverse': False, 'source_type': None}, 'resample_spec': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'pixfrac': 1.0, 'kernel': 'square', 'fillval': 'INDEF', 'weight_type': 'ivm', 'output_shape': None, 'crpix': None, 'crval': None, 'rotation': None, 'pixel_scale_ratio': 1.0, 'pixel_scale': None, 'single': False, 'blendheaders': True, 'allowed_memory': None, 'in_memory': True}, 'cube_build': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': False, 'input_dir': '', 'channel': 'all', 'band': 'all', 'grating': 'all', 'filter': 'all', 'output_type': 'band', 'scale1': 0.0, 'scale2': 0.0, 'scalew': 0.0, 'weighting': 'drizzle', 'coord_system': 'skyalign', 'rois': 0.0, 'roiw': 0.0, 'weight_power': 2.0, 'wavemin': None, 'wavemax': None, 'single': False, 'skip_dqflagging': False}, 'extract_1d': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'smoothing_length': None, 'bkg_fit': None, 'bkg_order': None, 'bkg_sigma_clip': 3.0, 'log_increment': 50, 'subtract_background': None, 'use_source_posn': None, 'center_xy': None, 'apply_apcorr': True, 'soss_threshold': 0.01, 'soss_n_os': 2, 'soss_transform': None, 'soss_tikfac': None, 'soss_width': 40.0, 'soss_bad_pix': 'model', 'soss_modelname': None}}}
2022-12-03 23:04:55,838 - stpipe.Spec2Pipeline - INFO - Prefetching reference files for dataset: 'mos_g140m_line1_NRS2_uncal.fits' reftypes = ['camera', 'collimator', 'dflat', 'disperser', 'distortion', 'fflat', 'filteroffset', 'flat', 'fore', 'fpa', 'fringe', 'ifufore', 'ifupost', 'ifuslicer', 'mrsxartcorr', 'msa', 'msaoper', 'ote', 'regions', 'sflat', 'specwcs', 'wavecorr', 'wavelengthrange', 'wfssbkg']
2022-12-03 23:04:55,869 - stpipe.Spec2Pipeline - INFO - Prefetch for CAMERA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf'.
2022-12-03 23:04:55,872 - stpipe.Spec2Pipeline - INFO - Prefetch for COLLIMATOR reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf'.
2022-12-03 23:04:55,873 - stpipe.Spec2Pipeline - INFO - Prefetch for DFLAT reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_dflat_0002.fits'.
2022-12-03 23:04:55,876 - stpipe.Spec2Pipeline - INFO - Prefetch for DISPERSER reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0032.asdf'.
2022-12-03 23:04:55,878 - stpipe.Spec2Pipeline - INFO - Prefetch for DISTORTION reference file is 'N/A'.
2022-12-03 23:04:55,878 - stpipe.Spec2Pipeline - INFO - Prefetch for FFLAT reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_fflat_0018.fits'.
2022-12-03 23:04:55,881 - stpipe.Spec2Pipeline - INFO - Prefetch for FILTEROFFSET reference file is 'N/A'.
2022-12-03 23:04:55,881 - stpipe.Spec2Pipeline - INFO - Prefetch for FLAT reference file is 'N/A'.
2022-12-03 23:04:55,882 - stpipe.Spec2Pipeline - INFO - Prefetch for FORE reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_fore_0023.asdf'.
2022-12-03 23:04:55,884 - stpipe.Spec2Pipeline - INFO - Prefetch for FPA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf'.
2022-12-03 23:04:55,888 - stpipe.Spec2Pipeline - INFO - Prefetch for FRINGE reference file is 'N/A'.
2022-12-03 23:04:55,888 - stpipe.Spec2Pipeline - INFO - Prefetch for IFUFORE reference file is 'N/A'.
2022-12-03 23:04:55,889 - stpipe.Spec2Pipeline - INFO - Prefetch for IFUPOST reference file is 'N/A'.
2022-12-03 23:04:55,889 - stpipe.Spec2Pipeline - INFO - Prefetch for IFUSLICER reference file is 'N/A'.
2022-12-03 23:04:55,889 - stpipe.Spec2Pipeline - INFO - Prefetch for MRSXARTCORR reference file is 'N/A'.
2022-12-03 23:04:55,890 - stpipe.Spec2Pipeline - INFO - Prefetch for MSA reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf'.
2022-12-03 23:04:55,894 - stpipe.Spec2Pipeline - INFO - Prefetch for MSAOPER reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_msaoper_0001.json'.
2022-12-03 23:04:55,898 - stpipe.Spec2Pipeline - INFO - Prefetch for OTE reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf'.
2022-12-03 23:04:55,907 - stpipe.Spec2Pipeline - INFO - Prefetch for REGIONS reference file is 'N/A'.
2022-12-03 23:04:55,907 - stpipe.Spec2Pipeline - INFO - Prefetch for SFLAT reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_sflat_0033.fits'.
2022-12-03 23:04:55,916 - stpipe.Spec2Pipeline - INFO - Prefetch for SPECWCS reference file is 'N/A'.
2022-12-03 23:04:55,916 - stpipe.Spec2Pipeline - INFO - Prefetch for WAVECORR reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_wavecorr_0004.asdf'.
2022-12-03 23:04:55,929 - stpipe.Spec2Pipeline - INFO - Prefetch for WAVELENGTHRANGE reference file is '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0004.asdf'.
2022-12-03 23:04:55,935 - stpipe.Spec2Pipeline - INFO - Prefetch for WFSSBKG reference file is 'N/A'.
2022-12-03 23:04:55,936 - stpipe.Spec2Pipeline - INFO - Starting calwebb_spec2 ...
2022-12-03 23:04:55,990 - stpipe.Spec2Pipeline - INFO - Processing product mos_g140m_line1_NRS2_uncal
2022-12-03 23:04:55,991 - stpipe.Spec2Pipeline - INFO - Working on input <ImageModel(2048, 2048) from mos_g140m_line1_NRS2_uncal.fits> ...
2022-12-03 23:04:56,281 - stpipe.Spec2Pipeline.assign_wcs - INFO - Step assign_wcs running with args (<ImageModel(2048, 2048) from mos_g140m_line1_NRS2_uncal.fits>,).
2022-12-03 23:04:56,283 - stpipe.Spec2Pipeline.assign_wcs - INFO - Step assign_wcs parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'sip_approx': True, 'sip_max_pix_error': 0.1, 'sip_degree': None, 'sip_max_inv_pix_error': 0.1, 'sip_inv_degree': None, 'sip_npoints': 12, 'slit_y_low': -0.55, 'slit_y_high': 0.55}
2022-12-03 23:04:56,440 - stpipe.Spec2Pipeline.assign_wcs - INFO - Retrieving open MSA slitlets for msa_metadata_id = 1 and dither_index = 1
2022-12-03 23:04:56,669 - stpipe.Spec2Pipeline.assign_wcs - INFO - gwa_ytilt is 0.1260581910610199 deg
2022-12-03 23:04:56,670 - stpipe.Spec2Pipeline.assign_wcs - INFO - gwa_xtilt is 0.3316612243652344 deg
2022-12-03 23:04:56,670 - stpipe.Spec2Pipeline.assign_wcs - INFO - theta_y correction: 0.0002496099796717191 deg
2022-12-03 23:04:56,672 - stpipe.Spec2Pipeline.assign_wcs - INFO - theta_x correction: 0.0 deg
2022-12-03 23:04:57,740 - stpipe.Spec2Pipeline.assign_wcs - INFO - Removing slit 65 from the list of open slits because the WCS bounding_box is completely outside the detector.
2022-12-03 23:04:57,753 - stpipe.Spec2Pipeline.assign_wcs - INFO - Removing slit 66 from the list of open slits because the WCS bounding_box is completely outside the detector.
2022-12-03 23:04:57,767 - stpipe.Spec2Pipeline.assign_wcs - INFO - Removing slit 68 from the list of open slits because the WCS bounding_box is completely outside the detector.
2022-12-03 23:04:57,806 - stpipe.Spec2Pipeline.assign_wcs - INFO - Removing slit 58 from the list of open slits because the WCS bounding_box is completely outside the detector.
2022-12-03 23:04:57,821 - stpipe.Spec2Pipeline.assign_wcs - INFO - Removing slit 59 from the list of open slits because the WCS bounding_box is completely outside the detector.
2022-12-03 23:04:57,835 - stpipe.Spec2Pipeline.assign_wcs - INFO - Removing slit 60 from the list of open slits because the WCS bounding_box is completely outside the detector.
2022-12-03 23:04:57,848 - stpipe.Spec2Pipeline.assign_wcs - INFO - Removing slit 61 from the list of open slits because the WCS bounding_box is completely outside the detector.
2022-12-03 23:04:57,861 - stpipe.Spec2Pipeline.assign_wcs - INFO - Removing slit 62 from the list of open slits because the WCS bounding_box is completely outside the detector.
2022-12-03 23:04:57,875 - stpipe.Spec2Pipeline.assign_wcs - INFO - Removing slit 63 from the list of open slits because the WCS bounding_box is completely outside the detector.
2022-12-03 23:04:57,888 - stpipe.Spec2Pipeline.assign_wcs - INFO - Removing slit 64 from the list of open slits because the WCS bounding_box is completely outside the detector.
2022-12-03 23:04:57,901 - stpipe.Spec2Pipeline.assign_wcs - INFO - Removing slit 67 from the list of open slits because the WCS bounding_box is completely outside the detector.
2022-12-03 23:04:57,902 - stpipe.Spec2Pipeline.assign_wcs - INFO - Slits projected on detector NRS2: [1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57]
2022-12-03 23:04:57,902 - stpipe.Spec2Pipeline.assign_wcs - INFO - Computing WCS for 57 open slitlets
2022-12-03 23:04:57,940 - stpipe.Spec2Pipeline.assign_wcs - INFO - gwa_ytilt is 0.1260581910610199 deg
2022-12-03 23:04:57,941 - stpipe.Spec2Pipeline.assign_wcs - INFO - gwa_xtilt is 0.3316612243652344 deg
2022-12-03 23:04:57,942 - stpipe.Spec2Pipeline.assign_wcs - INFO - theta_y correction: 0.0002496099796717191 deg
2022-12-03 23:04:57,943 - stpipe.Spec2Pipeline.assign_wcs - INFO - theta_x correction: 0.0 deg
2022-12-03 23:04:57,957 - stpipe.Spec2Pipeline.assign_wcs - INFO - SPORDER= -1, wrange=[9.7e-07, 1.89e-06]
2022-12-03 23:04:58,118 - stpipe.Spec2Pipeline.assign_wcs - INFO - There are 27 open slits in quadrant 1
2022-12-03 23:04:58,333 - stpipe.Spec2Pipeline.assign_wcs - INFO - There are 27 open slits in quadrant 2
2022-12-03 23:04:58,546 - stpipe.Spec2Pipeline.assign_wcs - INFO - There are 1 open slits in quadrant 3
2022-12-03 23:04:58,556 - stpipe.Spec2Pipeline.assign_wcs - INFO - There are 2 open slits in quadrant 4
2022-12-03 23:04:58,573 - stpipe.Spec2Pipeline.assign_wcs - INFO - There are 0 open slits in quadrant 5
2022-12-03 23:04:59,163 - stpipe.Spec2Pipeline.assign_wcs - INFO - Created a NIRSPEC nrs_msaspec pipeline with references {'distortion': None, 'filteroffset': None, 'specwcs': None, 'regions': None, 'wavelengthrange': '/grp/crds/cache/references/jwst/jwst_nirspec_wavelengthrange_0004.asdf', 'camera': '/grp/crds/cache/references/jwst/jwst_nirspec_camera_0004.asdf', 'collimator': '/grp/crds/cache/references/jwst/jwst_nirspec_collimator_0004.asdf', 'disperser': '/grp/crds/cache/references/jwst/jwst_nirspec_disperser_0032.asdf', 'fore': '/grp/crds/cache/references/jwst/jwst_nirspec_fore_0023.asdf', 'fpa': '/grp/crds/cache/references/jwst/jwst_nirspec_fpa_0005.asdf', 'msa': '/grp/crds/cache/references/jwst/jwst_nirspec_msa_0005.asdf', 'ote': '/grp/crds/cache/references/jwst/jwst_nirspec_ote_0005.asdf', 'ifupost': None, 'ifufore': None, 'ifuslicer': None, 'msametafile': 'V8460001000101_msa.fits'}
2022-12-03 23:05:00,479 - stpipe.Spec2Pipeline.assign_wcs - INFO - COMPLETED assign_wcs
2022-12-03 23:05:00,493 - stpipe.Spec2Pipeline.assign_wcs - INFO - Step assign_wcs done
2022-12-03 23:05:00,865 - stpipe.Spec2Pipeline.bkg_subtract - INFO - Step bkg_subtract running with args (<ImageModel(2048, 2048) from mos_g140m_line1_NRS2_uncal.fits>, []).
2022-12-03 23:05:00,866 - stpipe.Spec2Pipeline.bkg_subtract - INFO - Step bkg_subtract parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'save_combined_background': False, 'sigma': 3.0, 'maxiters': None, 'wfss_mmag_extract': None}
2022-12-03 23:05:00,867 - stpipe.Spec2Pipeline.bkg_subtract - INFO - Step skipped.
2022-12-03 23:05:00,869 - stpipe.Spec2Pipeline.bkg_subtract - INFO - Step bkg_subtract done
2022-12-03 23:05:01,230 - stpipe.Spec2Pipeline.imprint_subtract - INFO - Step imprint_subtract running with args (<ImageModel(2048, 2048) from mos_g140m_line1_NRS2_uncal.fits>, []).
2022-12-03 23:05:01,231 - stpipe.Spec2Pipeline.imprint_subtract - INFO - Step imprint_subtract parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': ''}
2022-12-03 23:05:01,232 - stpipe.Spec2Pipeline.imprint_subtract - INFO - Step skipped.
2022-12-03 23:05:01,234 - stpipe.Spec2Pipeline.imprint_subtract - INFO - Step imprint_subtract done
2022-12-03 23:05:01,600 - stpipe.Spec2Pipeline.msa_flagging - INFO - Step msa_flagging running with args (<ImageModel(2048, 2048) from mos_g140m_line1_NRS2_uncal.fits>,).
2022-12-03 23:05:01,601 - stpipe.Spec2Pipeline.msa_flagging - INFO - Step msa_flagging parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': ''}
2022-12-03 23:05:01,620 - stpipe.Spec2Pipeline.msa_flagging - INFO - Using reference file /grp/crds/cache/references/jwst/jwst_nirspec_msaoper_0001.json
2022-12-03 23:05:01,621 - stpipe.JwstStep - INFO - JwstStep instance created.
2022-12-03 23:05:01,871 - stpipe.Spec2Pipeline.msa_flagging - INFO - gwa_ytilt is 0.1260581910610199 deg
2022-12-03 23:05:01,871 - stpipe.Spec2Pipeline.msa_flagging - INFO - gwa_xtilt is 0.3316612243652344 deg
2022-12-03 23:05:01,872 - stpipe.Spec2Pipeline.msa_flagging - INFO - theta_y correction: 0.0002496099796717191 deg
2022-12-03 23:05:01,873 - stpipe.Spec2Pipeline.msa_flagging - INFO - theta_x correction: 0.0 deg
2022-12-03 23:05:01,887 - stpipe.Spec2Pipeline.msa_flagging - INFO - SPORDER= -1, wrange=[9.7e-07, 1.89e-06]
2022-12-03 23:05:02,051 - stpipe.Spec2Pipeline.msa_flagging - INFO - There are 5 open slits in quadrant 1
2022-12-03 23:05:02,091 - stpipe.Spec2Pipeline.msa_flagging - INFO - There are 3 open slits in quadrant 2
2022-12-03 23:05:02,116 - stpipe.Spec2Pipeline.msa_flagging - INFO - There are 9 open slits in quadrant 3
2022-12-03 23:05:02,197 - stpipe.Spec2Pipeline.msa_flagging - INFO - There are 3 open slits in quadrant 4
2022-12-03 23:05:02,222 - stpipe.Spec2Pipeline.msa_flagging - INFO - There are 0 open slits in quadrant 5
/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/astropy/modeling/bounding_box.py:83: RuntimeWarning: Invalid interval: upper bound -103.67242647612011 is strictly less than lower bound -0.5.
warnings.warn(f"Invalid interval: upper bound {upper} "
/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/astropy/modeling/bounding_box.py:83: RuntimeWarning: Invalid interval: upper bound -212.68515843943806 is strictly less than lower bound -0.5.
warnings.warn(f"Invalid interval: upper bound {upper} "
/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/astropy/modeling/bounding_box.py:83: RuntimeWarning: Invalid interval: upper bound -342.07188051944695 is strictly less than lower bound -0.5.
warnings.warn(f"Invalid interval: upper bound {upper} "
/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/astropy/modeling/bounding_box.py:83: RuntimeWarning: Invalid interval: upper bound -321.21045292546796 is strictly less than lower bound -0.5.
warnings.warn(f"Invalid interval: upper bound {upper} "
/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/astropy/modeling/bounding_box.py:83: RuntimeWarning: Invalid interval: upper bound -342.531517365775 is strictly less than lower bound -0.5.
warnings.warn(f"Invalid interval: upper bound {upper} "
/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/astropy/modeling/bounding_box.py:83: RuntimeWarning: Invalid interval: upper bound -420.84938370342115 is strictly less than lower bound -0.5.
warnings.warn(f"Invalid interval: upper bound {upper} "
/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/astropy/modeling/bounding_box.py:83: RuntimeWarning: Invalid interval: upper bound -450.04257156132417 is strictly less than lower bound -0.5.
warnings.warn(f"Invalid interval: upper bound {upper} "
/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/astropy/modeling/bounding_box.py:83: RuntimeWarning: Invalid interval: upper bound -459.05344370773037 is strictly less than lower bound -0.5.
warnings.warn(f"Invalid interval: upper bound {upper} "
2022-12-03 23:05:16,162 - stpipe.Spec2Pipeline.msa_flagging - INFO - Step msa_flagging done
2022-12-03 23:05:16,791 - stpipe.Spec2Pipeline.extract_2d - INFO - Step extract_2d running with args (<ImageModel(2048, 2048) from mos_g140m_line1_NRS2_uncal.fits>,).
2022-12-03 23:05:16,793 - stpipe.Spec2Pipeline.extract_2d - INFO - Step extract_2d parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'slit_name': None, 'extract_orders': None, 'grism_objects': None, 'tsgrism_extract_height': None, 'wfss_extract_half_height': 5, 'wfss_mmag_extract': None, 'wfss_nbright': 1000}
2022-12-03 23:05:16,812 - stpipe.Spec2Pipeline.extract_2d - INFO - EXP_TYPE is NRS_MSASPEC
2022-12-03 23:05:17,691 - stpipe.Spec2Pipeline.extract_2d - INFO - Name of subarray extracted: 6
2022-12-03 23:05:17,692 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray x-extents are: 138 1619
2022-12-03 23:05:17,692 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray y-extents are: 1762 1785
2022-12-03 23:05:17,902 - stpipe.Spec2Pipeline.extract_2d - INFO - set slit_attributes completed
2022-12-03 23:05:17,911 - stpipe.Spec2Pipeline.extract_2d - INFO - Update S_REGION to POLYGON ICRS 156.263159350 -45.671304678 156.263027991 -45.671181725 156.262965146 -45.671213584 156.263096502 -45.671336538
2022-12-03 23:05:17,912 - stpipe.Spec2Pipeline.extract_2d - INFO - Updated S_REGION to POLYGON ICRS 156.263159350 -45.671304678 156.263027991 -45.671181725 156.262965146 -45.671213584 156.263096502 -45.671336538
2022-12-03 23:05:19,251 - stpipe.Spec2Pipeline.extract_2d - INFO - Name of subarray extracted: 7
2022-12-03 23:05:19,252 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray x-extents are: 138 1619
2022-12-03 23:05:19,253 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray y-extents are: 1757 1780
2022-12-03 23:05:19,477 - stpipe.Spec2Pipeline.extract_2d - INFO - set slit_attributes completed
2022-12-03 23:05:19,486 - stpipe.Spec2Pipeline.extract_2d - INFO - Update S_REGION to POLYGON ICRS 156.263031777 -45.671185268 156.262900430 -45.671062325 156.262837587 -45.671094183 156.262968931 -45.671217127
2022-12-03 23:05:19,488 - stpipe.Spec2Pipeline.extract_2d - INFO - Updated S_REGION to POLYGON ICRS 156.263031777 -45.671185268 156.262900430 -45.671062325 156.262837587 -45.671094183 156.262968931 -45.671217127
2022-12-03 23:05:20,887 - stpipe.Spec2Pipeline.extract_2d - INFO - Name of subarray extracted: 8
2022-12-03 23:05:20,888 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray x-extents are: 137 1618
2022-12-03 23:05:20,889 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray y-extents are: 1807 1830
2022-12-03 23:05:21,118 - stpipe.Spec2Pipeline.extract_2d - INFO - set slit_attributes completed
2022-12-03 23:05:21,127 - stpipe.Spec2Pipeline.extract_2d - INFO - Update S_REGION to POLYGON ICRS 156.264221225 -45.672423837 156.264089757 -45.672300789 156.264026890 -45.672332658 156.264158355 -45.672455707
2022-12-03 23:05:21,129 - stpipe.Spec2Pipeline.extract_2d - INFO - Updated S_REGION to POLYGON ICRS 156.264221225 -45.672423837 156.264089757 -45.672300789 156.264026890 -45.672332658 156.264158355 -45.672455707
2022-12-03 23:05:22,026 - stpipe.Spec2Pipeline.extract_2d - INFO - Name of subarray extracted: 9
2022-12-03 23:05:22,028 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray x-extents are: 137 1618
2022-12-03 23:05:22,029 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray y-extents are: 1802 1825
2022-12-03 23:05:22,275 - stpipe.Spec2Pipeline.extract_2d - INFO - set slit_attributes completed
2022-12-03 23:05:22,286 - stpipe.Spec2Pipeline.extract_2d - INFO - Update S_REGION to POLYGON ICRS 156.264093546 -45.672304335 156.263962090 -45.672181297 156.263899225 -45.672213165 156.264030678 -45.672336204
2022-12-03 23:05:22,288 - stpipe.Spec2Pipeline.extract_2d - INFO - Updated S_REGION to POLYGON ICRS 156.264093546 -45.672304335 156.263962090 -45.672181297 156.263899225 -45.672213165 156.264030678 -45.672336204
2022-12-03 23:05:23,792 - stpipe.Spec2Pipeline.extract_2d - INFO - Name of subarray extracted: 10
2022-12-03 23:05:23,794 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray x-extents are: 137 1618
2022-12-03 23:05:23,794 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray y-extents are: 1797 1820
2022-12-03 23:05:24,087 - stpipe.Spec2Pipeline.extract_2d - INFO - set slit_attributes completed
2022-12-03 23:05:24,098 - stpipe.Spec2Pipeline.extract_2d - INFO - Update S_REGION to POLYGON ICRS 156.263965879 -45.672184843 156.263834436 -45.672061816 156.263771574 -45.672093683 156.263903014 -45.672216711
2022-12-03 23:05:24,100 - stpipe.Spec2Pipeline.extract_2d - INFO - Updated S_REGION to POLYGON ICRS 156.263965879 -45.672184843 156.263834436 -45.672061816 156.263771574 -45.672093683 156.263903014 -45.672216711
2022-12-03 23:05:25,529 - stpipe.Spec2Pipeline.extract_2d - INFO - Name of subarray extracted: 11
2022-12-03 23:05:25,530 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray x-extents are: 136 1617
2022-12-03 23:05:25,531 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray y-extents are: 1837 1860
2022-12-03 23:05:25,759 - stpipe.Spec2Pipeline.extract_2d - INFO - set slit_attributes completed
2022-12-03 23:05:25,770 - stpipe.Spec2Pipeline.extract_2d - INFO - Update S_REGION to POLYGON ICRS 156.264900700 -45.673185083 156.264769161 -45.673061972 156.264706280 -45.673093849 156.264837816 -45.673216961
2022-12-03 23:05:25,772 - stpipe.Spec2Pipeline.extract_2d - INFO - Updated S_REGION to POLYGON ICRS 156.264900700 -45.673185083 156.264769161 -45.673061972 156.264706280 -45.673093849 156.264837816 -45.673216961
2022-12-03 23:05:27,233 - stpipe.Spec2Pipeline.extract_2d - INFO - Name of subarray extracted: 14
2022-12-03 23:05:27,234 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray x-extents are: 104 1582
2022-12-03 23:05:27,234 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray y-extents are: 1222 1243
2022-12-03 23:05:27,463 - stpipe.Spec2Pipeline.extract_2d - INFO - set slit_attributes completed
2022-12-03 23:05:27,472 - stpipe.Spec2Pipeline.extract_2d - INFO - Update S_REGION to POLYGON ICRS 156.249021000 -45.658685479 156.248891047 -45.658563629 156.248828487 -45.658595378 156.248958437 -45.658717230
2022-12-03 23:05:27,474 - stpipe.Spec2Pipeline.extract_2d - INFO - Updated S_REGION to POLYGON ICRS 156.249021000 -45.658685479 156.248891047 -45.658563629 156.248828487 -45.658595378 156.248958437 -45.658717230
2022-12-03 23:05:28,372 - stpipe.Spec2Pipeline.extract_2d - INFO - Name of subarray extracted: 15
2022-12-03 23:05:28,373 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray x-extents are: 122 1604
2022-12-03 23:05:28,373 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray y-extents are: 1887 1910
2022-12-03 23:05:28,595 - stpipe.Spec2Pipeline.extract_2d - INFO - set slit_attributes completed
2022-12-03 23:05:28,605 - stpipe.Spec2Pipeline.extract_2d - INFO - Update S_REGION to POLYGON ICRS 156.265657550 -45.674645528 156.265525910 -45.674522304 156.265463012 -45.674554193 156.265594650 -45.674677417
2022-12-03 23:05:28,606 - stpipe.Spec2Pipeline.extract_2d - INFO - Updated S_REGION to POLYGON ICRS 156.265657550 -45.674645528 156.265525910 -45.674522304 156.265463012 -45.674554193 156.265594650 -45.674677417
2022-12-03 23:05:30,112 - stpipe.Spec2Pipeline.extract_2d - INFO - Name of subarray extracted: 16
2022-12-03 23:05:30,113 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray x-extents are: 117 1598
2022-12-03 23:05:30,113 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray y-extents are: 1822 1845
2022-12-03 23:05:30,393 - stpipe.Spec2Pipeline.extract_2d - INFO - set slit_attributes completed
2022-12-03 23:05:30,409 - stpipe.Spec2Pipeline.extract_2d - INFO - Update S_REGION to POLYGON ICRS 156.263909649 -45.673134588 156.263778173 -45.673011497 156.263715311 -45.673043371 156.263846784 -45.673166463
2022-12-03 23:05:30,411 - stpipe.Spec2Pipeline.extract_2d - INFO - Updated S_REGION to POLYGON ICRS 156.263909649 -45.673134588 156.263778173 -45.673011497 156.263715311 -45.673043371 156.263846784 -45.673166463
2022-12-03 23:05:31,892 - stpipe.Spec2Pipeline.extract_2d - INFO - Name of subarray extracted: 17
2022-12-03 23:05:31,893 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray x-extents are: 115 1597
2022-12-03 23:05:31,894 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray y-extents are: 1852 1875
2022-12-03 23:05:32,124 - stpipe.Spec2Pipeline.extract_2d - INFO - set slit_attributes completed
2022-12-03 23:05:32,133 - stpipe.Spec2Pipeline.extract_2d - INFO - Update S_REGION to POLYGON ICRS 156.264589177 -45.673896098 156.264457630 -45.673772943 156.264394753 -45.673804824 156.264526298 -45.673927980
2022-12-03 23:05:32,136 - stpipe.Spec2Pipeline.extract_2d - INFO - Updated S_REGION to POLYGON ICRS 156.264589177 -45.673896098 156.264457630 -45.673772943 156.264394753 -45.673804824 156.264526298 -45.673927980
2022-12-03 23:05:33,049 - stpipe.Spec2Pipeline.extract_2d - INFO - Name of subarray extracted: 18
2022-12-03 23:05:33,050 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray x-extents are: 115 1597
2022-12-03 23:05:33,051 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray y-extents are: 1847 1870
2022-12-03 23:05:33,346 - stpipe.Spec2Pipeline.extract_2d - INFO - set slit_attributes completed
2022-12-03 23:05:33,356 - stpipe.Spec2Pipeline.extract_2d - INFO - Update S_REGION to POLYGON ICRS 156.264461421 -45.673776492 156.264329887 -45.673653347 156.264267013 -45.673685227 156.264398544 -45.673808373
2022-12-03 23:05:33,357 - stpipe.Spec2Pipeline.extract_2d - INFO - Updated S_REGION to POLYGON ICRS 156.264461421 -45.673776492 156.264329887 -45.673653347 156.264267013 -45.673685227 156.264398544 -45.673808373
2022-12-03 23:05:34,936 - stpipe.Spec2Pipeline.extract_2d - INFO - Name of subarray extracted: 19
2022-12-03 23:05:34,937 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray x-extents are: 93 1571
2022-12-03 23:05:34,937 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray y-extents are: 1337 1358
2022-12-03 23:05:35,162 - stpipe.Spec2Pipeline.extract_2d - INFO - set slit_attributes completed
2022-12-03 23:05:35,172 - stpipe.Spec2Pipeline.extract_2d - INFO - Update S_REGION to POLYGON ICRS 156.251408362 -45.661673296 156.251278132 -45.661551203 156.251215522 -45.661582975 156.251345749 -45.661705069
2022-12-03 23:05:35,174 - stpipe.Spec2Pipeline.extract_2d - INFO - Updated S_REGION to POLYGON ICRS 156.251408362 -45.661673296 156.251278132 -45.661551203 156.251215522 -45.661582975 156.251345749 -45.661705069
2022-12-03 23:05:36,069 - stpipe.Spec2Pipeline.extract_2d - INFO - Name of subarray extracted: 21
2022-12-03 23:05:36,070 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray x-extents are: 89 1568
2022-12-03 23:05:36,071 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray y-extents are: 1382 1403
2022-12-03 23:05:36,349 - stpipe.Spec2Pipeline.extract_2d - INFO - set slit_attributes completed
2022-12-03 23:05:36,359 - stpipe.Spec2Pipeline.extract_2d - INFO - Update S_REGION to POLYGON ICRS 156.252374207 -45.662828704 156.252243867 -45.662706516 156.252181238 -45.662738296 156.252311575 -45.662860485
2022-12-03 23:05:36,360 - stpipe.Spec2Pipeline.extract_2d - INFO - Updated S_REGION to POLYGON ICRS 156.252374207 -45.662828704 156.252243867 -45.662706516 156.252181238 -45.662738296 156.252311575 -45.662860485
2022-12-03 23:05:37,873 - stpipe.Spec2Pipeline.extract_2d - INFO - Name of subarray extracted: 25
2022-12-03 23:05:37,874 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray x-extents are: 70 1547
2022-12-03 23:05:37,875 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray y-extents are: 1277 1298
2022-12-03 23:05:38,100 - stpipe.Spec2Pipeline.extract_2d - INFO - set slit_attributes completed
2022-12-03 23:05:38,110 - stpipe.Spec2Pipeline.extract_2d - INFO - Update S_REGION to POLYGON ICRS 156.249200048 -45.660601994 156.249070003 -45.660480012 156.249007436 -45.660511773 156.249137478 -45.660633755
2022-12-03 23:05:38,111 - stpipe.Spec2Pipeline.extract_2d - INFO - Updated S_REGION to POLYGON ICRS 156.249200048 -45.660601994 156.249070003 -45.660480012 156.249007436 -45.660511773 156.249137478 -45.660633755
2022-12-03 23:05:39,589 - stpipe.Spec2Pipeline.extract_2d - INFO - Name of subarray extracted: 26
2022-12-03 23:05:39,590 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray x-extents are: 65 1544
2022-12-03 23:05:39,590 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray y-extents are: 1563 1584
2022-12-03 23:05:39,806 - stpipe.Spec2Pipeline.extract_2d - INFO - set slit_attributes completed
2022-12-03 23:05:39,815 - stpipe.Spec2Pipeline.extract_2d - INFO - Update S_REGION to POLYGON ICRS 156.255900113 -45.667634746 156.255769353 -45.667512168 156.255706649 -45.667543987 156.255837406 -45.667666566
2022-12-03 23:05:39,817 - stpipe.Spec2Pipeline.extract_2d - INFO - Updated S_REGION to POLYGON ICRS 156.255900113 -45.667634746 156.255769353 -45.667512168 156.255706649 -45.667543987 156.255837406 -45.667666566
2022-12-03 23:05:40,710 - stpipe.Spec2Pipeline.extract_2d - INFO - Name of subarray extracted: 27
2022-12-03 23:05:40,712 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray x-extents are: 31 1507
2022-12-03 23:05:40,712 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray y-extents are: 1202 1222
2022-12-03 23:05:40,931 - stpipe.Spec2Pipeline.extract_2d - INFO - set slit_attributes completed
2022-12-03 23:05:40,940 - stpipe.Spec2Pipeline.extract_2d - INFO - Update S_REGION to POLYGON ICRS 156.246097982 -45.659439921 156.245968181 -45.659318074 156.245905674 -45.659349821 156.246035471 -45.659471670
2022-12-03 23:05:40,942 - stpipe.Spec2Pipeline.extract_2d - INFO - Updated S_REGION to POLYGON ICRS 156.246097982 -45.659439921 156.245968181 -45.659318074 156.245905674 -45.659349821 156.246035471 -45.659471670
2022-12-03 23:05:42,536 - stpipe.Spec2Pipeline.extract_2d - INFO - Name of subarray extracted: 29
2022-12-03 23:05:42,537 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray x-extents are: 22 1503
2022-12-03 23:05:42,537 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray y-extents are: 1868 1889
2022-12-03 23:05:42,756 - stpipe.Spec2Pipeline.extract_2d - INFO - set slit_attributes completed
2022-12-03 23:05:42,765 - stpipe.Spec2Pipeline.extract_2d - INFO - Update S_REGION to POLYGON ICRS 156.261846987 -45.675840555 156.261715536 -45.675717309 156.261652705 -45.675749201 156.261784154 -45.675872448
2022-12-03 23:05:42,766 - stpipe.Spec2Pipeline.extract_2d - INFO - Updated S_REGION to POLYGON ICRS 156.261846987 -45.675840555 156.261715536 -45.675717309 156.261652705 -45.675749201 156.261784154 -45.675872448
2022-12-03 23:05:44,208 - stpipe.Spec2Pipeline.extract_2d - INFO - Name of subarray extracted: 31
2022-12-03 23:05:44,208 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray x-extents are: 0 1464
2022-12-03 23:05:44,209 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray y-extents are: 1368 1388
2022-12-03 23:05:44,417 - stpipe.Spec2Pipeline.extract_2d - INFO - set slit_attributes completed
2022-12-03 23:05:44,425 - stpipe.Spec2Pipeline.extract_2d - INFO - Update S_REGION to POLYGON ICRS 156.248622769 -45.664184605 156.248492610 -45.664062392 156.248430047 -45.664094174 156.248560203 -45.664216388
2022-12-03 23:05:44,427 - stpipe.Spec2Pipeline.extract_2d - INFO - Updated S_REGION to POLYGON ICRS 156.248622769 -45.664184605 156.248492610 -45.664062392 156.248430047 -45.664094174 156.248560203 -45.664216388
2022-12-03 23:05:45,286 - stpipe.Spec2Pipeline.extract_2d - INFO - Name of subarray extracted: 32
2022-12-03 23:05:45,286 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray x-extents are: 0 1432
2022-12-03 23:05:45,287 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray y-extents are: 1353 1372
2022-12-03 23:05:45,487 - stpipe.Spec2Pipeline.extract_2d - INFO - set slit_attributes completed
2022-12-03 23:05:45,496 - stpipe.Spec2Pipeline.extract_2d - INFO - Update S_REGION to POLYGON ICRS 156.247206881 -45.664355302 156.247076805 -45.664233103 156.247014266 -45.664264884 156.247144339 -45.664387085
2022-12-03 23:05:45,497 - stpipe.Spec2Pipeline.extract_2d - INFO - Updated S_REGION to POLYGON ICRS 156.247206881 -45.664355302 156.247076805 -45.664233103 156.247014266 -45.664264884 156.247144339 -45.664387085
2022-12-03 23:05:47,021 - stpipe.Spec2Pipeline.extract_2d - INFO - Name of subarray extracted: 33
2022-12-03 23:05:47,022 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray x-extents are: 0 1418
2022-12-03 23:05:47,022 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray y-extents are: 1273 1292
2022-12-03 23:05:47,241 - stpipe.Spec2Pipeline.extract_2d - INFO - set slit_attributes completed
2022-12-03 23:05:47,250 - stpipe.Spec2Pipeline.extract_2d - INFO - Update S_REGION to POLYGON ICRS 156.244841867 -45.662633161 156.244712012 -45.662511121 156.244649520 -45.662542887 156.244779372 -45.662664928
2022-12-03 23:05:47,251 - stpipe.Spec2Pipeline.extract_2d - INFO - Updated S_REGION to POLYGON ICRS 156.244841867 -45.662633161 156.244712012 -45.662511121 156.244649520 -45.662542887 156.244779372 -45.662664928
2022-12-03 23:05:48,148 - stpipe.Spec2Pipeline.extract_2d - INFO - Name of subarray extracted: 35
2022-12-03 23:05:48,149 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray x-extents are: 0 1428
2022-12-03 23:05:48,149 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray y-extents are: 1723 1744
2022-12-03 23:05:48,361 - stpipe.Spec2Pipeline.extract_2d - INFO - set slit_attributes completed
2022-12-03 23:05:48,370 - stpipe.Spec2Pipeline.extract_2d - INFO - Update S_REGION to POLYGON ICRS 156.255896650 -45.673517700 156.255765657 -45.673394713 156.255702938 -45.673426578 156.255833929 -45.673549566
2022-12-03 23:05:48,372 - stpipe.Spec2Pipeline.extract_2d - INFO - Updated S_REGION to POLYGON ICRS 156.255896650 -45.673517700 156.255765657 -45.673394713 156.255702938 -45.673426578 156.255833929 -45.673549566
2022-12-03 23:05:49,950 - stpipe.Spec2Pipeline.extract_2d - INFO - Name of subarray extracted: 37
2022-12-03 23:05:49,951 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray x-extents are: 0 1412
2022-12-03 23:05:49,951 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray y-extents are: 1664 1683
2022-12-03 23:05:50,162 - stpipe.Spec2Pipeline.extract_2d - INFO - set slit_attributes completed
2022-12-03 23:05:50,171 - stpipe.Spec2Pipeline.extract_2d - INFO - Update S_REGION to POLYGON ICRS 156.253937935 -45.672305027 156.253807112 -45.672182158 156.253744431 -45.672214010 156.253875252 -45.672336880
2022-12-03 23:05:50,173 - stpipe.Spec2Pipeline.extract_2d - INFO - Updated S_REGION to POLYGON ICRS 156.253937935 -45.672305027 156.253807112 -45.672182158 156.253744431 -45.672214010 156.253875252 -45.672336880
2022-12-03 23:05:51,048 - stpipe.Spec2Pipeline.extract_2d - INFO - Name of subarray extracted: 38
2022-12-03 23:05:51,048 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray x-extents are: 0 1404
2022-12-03 23:05:51,049 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray y-extents are: 1604 1623
2022-12-03 23:05:51,940 - stpipe.Spec2Pipeline.extract_2d - INFO - set slit_attributes completed
2022-12-03 23:05:51,949 - stpipe.Spec2Pipeline.extract_2d - INFO - Update S_REGION to POLYGON ICRS 156.252241050 -45.670961715 156.252110387 -45.670838969 156.252047741 -45.670870808 156.252178401 -45.670993555
2022-12-03 23:05:51,950 - stpipe.Spec2Pipeline.extract_2d - INFO - Updated S_REGION to POLYGON ICRS 156.252241050 -45.670961715 156.252110387 -45.670838969 156.252047741 -45.670870808 156.252178401 -45.670993555
2022-12-03 23:05:52,814 - stpipe.Spec2Pipeline.extract_2d - INFO - Name of subarray extracted: 39
2022-12-03 23:05:52,815 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray x-extents are: 0 1385
2022-12-03 23:05:52,815 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray y-extents are: 1243 1262
2022-12-03 23:05:53,021 - stpipe.Spec2Pipeline.extract_2d - INFO - set slit_attributes completed
2022-12-03 23:05:53,030 - stpipe.Spec2Pipeline.extract_2d - INFO - Update S_REGION to POLYGON ICRS 156.243049984 -45.662448591 156.242920250 -45.662326596 156.242857790 -45.662358358 156.242987521 -45.662480354
2022-12-03 23:05:53,031 - stpipe.Spec2Pipeline.extract_2d - INFO - Updated S_REGION to POLYGON ICRS 156.243049984 -45.662448591 156.242920250 -45.662326596 156.242857790 -45.662358358 156.242987521 -45.662480354
2022-12-03 23:05:54,576 - stpipe.Spec2Pipeline.extract_2d - INFO - Name of subarray extracted: 41
2022-12-03 23:05:54,577 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray x-extents are: 0 1393
2022-12-03 23:05:54,577 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray y-extents are: 1769 1788
2022-12-03 23:05:54,784 - stpipe.Spec2Pipeline.extract_2d - INFO - set slit_attributes completed
2022-12-03 23:05:54,793 - stpipe.Spec2Pipeline.extract_2d - INFO - Update S_REGION to POLYGON ICRS 156.255829101 -45.675209536 156.255698046 -45.675086431 156.255635323 -45.675118310 156.255766375 -45.675241415
2022-12-03 23:05:54,795 - stpipe.Spec2Pipeline.extract_2d - INFO - Updated S_REGION to POLYGON ICRS 156.255829101 -45.675209536 156.255698046 -45.675086431 156.255635323 -45.675118310 156.255766375 -45.675241415
2022-12-03 23:05:55,648 - stpipe.Spec2Pipeline.extract_2d - INFO - Name of subarray extracted: 53
2022-12-03 23:05:55,649 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray x-extents are: 0 819
2022-12-03 23:05:55,649 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray y-extents are: 1316 1329
2022-12-03 23:05:55,842 - stpipe.Spec2Pipeline.extract_2d - INFO - set slit_attributes completed
2022-12-03 23:05:55,851 - stpipe.Spec2Pipeline.extract_2d - INFO - Update S_REGION to POLYGON ICRS 156.226123221 -45.673642180 156.225994086 -45.673519691 156.225931834 -45.673551545 156.226060967 -45.673674035
2022-12-03 23:05:55,852 - stpipe.Spec2Pipeline.extract_2d - INFO - Updated S_REGION to POLYGON ICRS 156.226123221 -45.673642180 156.225994086 -45.673519691 156.225931834 -45.673551545 156.226060967 -45.673674035
2022-12-03 23:05:57,402 - stpipe.Spec2Pipeline.extract_2d - INFO - Name of subarray extracted: 54
2022-12-03 23:05:57,403 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray x-extents are: 0 819
2022-12-03 23:05:57,403 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray y-extents are: 1306 1319
2022-12-03 23:05:57,598 - stpipe.Spec2Pipeline.extract_2d - INFO - set slit_attributes completed
2022-12-03 23:05:57,607 - stpipe.Spec2Pipeline.extract_2d - INFO - Update S_REGION to POLYGON ICRS 156.225872406 -45.673404272 156.225743296 -45.673281804 156.225681049 -45.673313656 156.225810156 -45.673436124
2022-12-03 23:05:57,608 - stpipe.Spec2Pipeline.extract_2d - INFO - Updated S_REGION to POLYGON ICRS 156.225872406 -45.673404272 156.225743296 -45.673281804 156.225681049 -45.673313656 156.225810156 -45.673436124
2022-12-03 23:05:58,476 - stpipe.Spec2Pipeline.extract_2d - INFO - Name of subarray extracted: 1
2022-12-03 23:05:58,477 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray x-extents are: 118 1591
2022-12-03 23:05:58,477 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray y-extents are: 34 53
2022-12-03 23:05:58,696 - stpipe.Spec2Pipeline.extract_2d - INFO - set slit_attributes completed
2022-12-03 23:05:58,706 - stpipe.Spec2Pipeline.extract_2d - INFO - Update S_REGION to POLYGON ICRS 156.221266819 -45.630196596 156.221139727 -45.630076839 156.221077689 -45.630108429 156.221204778 -45.630228186
2022-12-03 23:05:58,707 - stpipe.Spec2Pipeline.extract_2d - INFO - Updated S_REGION to POLYGON ICRS 156.221266819 -45.630196596 156.221139727 -45.630076839 156.221077689 -45.630108429 156.221204778 -45.630228186
2022-12-03 23:06:00,309 - stpipe.Spec2Pipeline.extract_2d - INFO - Name of subarray extracted: 2
2022-12-03 23:06:00,310 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray x-extents are: 124 1598
2022-12-03 23:06:00,311 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray y-extents are: 332 351
2022-12-03 23:06:00,516 - stpipe.Spec2Pipeline.extract_2d - INFO - set slit_attributes completed
2022-12-03 23:06:00,525 - stpipe.Spec2Pipeline.extract_2d - INFO - Update S_REGION to POLYGON ICRS 156.228476955 -45.637109572 156.228349188 -45.636989367 156.228287022 -45.637020983 156.228414786 -45.637141189
2022-12-03 23:06:00,526 - stpipe.Spec2Pipeline.extract_2d - INFO - Updated S_REGION to POLYGON ICRS 156.228476955 -45.637109572 156.228349188 -45.636989367 156.228287022 -45.637020983 156.228414786 -45.637141189
2022-12-03 23:06:01,386 - stpipe.Spec2Pipeline.extract_2d - INFO - Name of subarray extracted: 3
2022-12-03 23:06:01,387 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray x-extents are: 116 1589
2022-12-03 23:06:01,388 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray y-extents are: 55 73
2022-12-03 23:06:01,601 - stpipe.Spec2Pipeline.extract_2d - INFO - set slit_attributes completed
2022-12-03 23:06:01,610 - stpipe.Spec2Pipeline.extract_2d - INFO - Update S_REGION to POLYGON ICRS 156.221674541 -45.630705151 156.221547408 -45.630585366 156.221485363 -45.630616957 156.221612493 -45.630736743
2022-12-03 23:06:01,612 - stpipe.Spec2Pipeline.extract_2d - INFO - Updated S_REGION to POLYGON ICRS 156.221674541 -45.630705151 156.221547408 -45.630585366 156.221485363 -45.630616957 156.221612493 -45.630736743
2022-12-03 23:06:03,187 - stpipe.Spec2Pipeline.extract_2d - INFO - Name of subarray extracted: 4
2022-12-03 23:06:03,188 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray x-extents are: 111 1584
2022-12-03 23:06:03,188 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray y-extents are: 161 179
2022-12-03 23:06:03,393 - stpipe.Spec2Pipeline.extract_2d - INFO - set slit_attributes completed
2022-12-03 23:06:03,402 - stpipe.Spec2Pipeline.extract_2d - INFO - Update S_REGION to POLYGON ICRS 156.224010549 -45.633278787 156.223883188 -45.633158845 156.223821102 -45.633190445 156.223948460 -45.633310387
2022-12-03 23:06:03,403 - stpipe.Spec2Pipeline.extract_2d - INFO - Updated S_REGION to POLYGON ICRS 156.224010549 -45.633278787 156.223883188 -45.633158845 156.223821102 -45.633190445 156.223948460 -45.633310387
2022-12-03 23:06:04,276 - stpipe.Spec2Pipeline.extract_2d - INFO - Name of subarray extracted: 5
2022-12-03 23:06:04,278 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray x-extents are: 99 1573
2022-12-03 23:06:04,278 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray y-extents are: 307 326
2022-12-03 23:06:04,499 - stpipe.Spec2Pipeline.extract_2d - INFO - set slit_attributes completed
2022-12-03 23:06:04,508 - stpipe.Spec2Pipeline.extract_2d - INFO - Update S_REGION to POLYGON ICRS 156.227084510 -45.636919416 156.226956832 -45.636799245 156.226894691 -45.636830857 156.227022367 -45.636951029
2022-12-03 23:06:04,509 - stpipe.Spec2Pipeline.extract_2d - INFO - Updated S_REGION to POLYGON ICRS 156.227084510 -45.636919416 156.226956832 -45.636799245 156.226894691 -45.636830857 156.227022367 -45.636951029
2022-12-03 23:06:06,121 - stpipe.Spec2Pipeline.extract_2d - INFO - Name of subarray extracted: 12
2022-12-03 23:06:06,122 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray x-extents are: 91 1566
2022-12-03 23:06:06,123 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray y-extents are: 484 503
2022-12-03 23:06:06,336 - stpipe.Spec2Pipeline.extract_2d - INFO - set slit_attributes completed
2022-12-03 23:06:06,347 - stpipe.Spec2Pipeline.extract_2d - INFO - Update S_REGION to POLYGON ICRS 156.230998580 -45.641224458 156.230870498 -45.641103991 156.230808285 -45.641135623 156.230936364 -45.641256090
2022-12-03 23:06:06,348 - stpipe.Spec2Pipeline.extract_2d - INFO - Updated S_REGION to POLYGON ICRS 156.230998580 -45.641224458 156.230870498 -45.641103991 156.230808285 -45.641135623 156.230936364 -45.641256090
2022-12-03 23:06:07,222 - stpipe.Spec2Pipeline.extract_2d - INFO - Name of subarray extracted: 13
2022-12-03 23:06:07,223 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray x-extents are: 80 1553
2022-12-03 23:06:07,224 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray y-extents are: 95 113
2022-12-03 23:06:07,429 - stpipe.Spec2Pipeline.extract_2d - INFO - set slit_attributes completed
2022-12-03 23:06:07,438 - stpipe.Spec2Pipeline.extract_2d - INFO - Update S_REGION to POLYGON ICRS 156.221461889 -45.632246282 156.221334710 -45.632126430 156.221272668 -45.632158022 156.221399846 -45.632277874
2022-12-03 23:06:07,439 - stpipe.Spec2Pipeline.extract_2d - INFO - Updated S_REGION to POLYGON ICRS 156.221461889 -45.632246282 156.221334710 -45.632126430 156.221272668 -45.632158022 156.221399846 -45.632277874
2022-12-03 23:06:09,021 - stpipe.Spec2Pipeline.extract_2d - INFO - Name of subarray extracted: 20
2022-12-03 23:06:09,022 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray x-extents are: 76 1551
2022-12-03 23:06:09,023 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray y-extents are: 751 770
2022-12-03 23:06:09,278 - stpipe.Spec2Pipeline.extract_2d - INFO - set slit_attributes completed
2022-12-03 23:06:09,288 - stpipe.Spec2Pipeline.extract_2d - INFO - Update S_REGION to POLYGON ICRS 156.236828252 -45.647826217 156.236699542 -45.647705266 156.236637217 -45.647736933 156.236765924 -45.647857884
2022-12-03 23:06:09,289 - stpipe.Spec2Pipeline.extract_2d - INFO - Updated S_REGION to POLYGON ICRS 156.236828252 -45.647826217 156.236699542 -45.647705266 156.236637217 -45.647736933 156.236765924 -45.647857884
2022-12-03 23:06:10,884 - stpipe.Spec2Pipeline.extract_2d - INFO - Name of subarray extracted: 22
2022-12-03 23:06:10,885 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray x-extents are: 68 1542
2022-12-03 23:06:10,886 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray y-extents are: 645 664
2022-12-03 23:06:11,089 - stpipe.Spec2Pipeline.extract_2d - INFO - set slit_attributes completed
2022-12-03 23:06:11,097 - stpipe.Spec2Pipeline.extract_2d - INFO - Update S_REGION to POLYGON ICRS 156.234035860 -45.645450737 156.233907420 -45.645329977 156.233845148 -45.645361628 156.233973585 -45.645482389
2022-12-03 23:06:11,098 - stpipe.Spec2Pipeline.extract_2d - INFO - Updated S_REGION to POLYGON ICRS 156.234035860 -45.645450737 156.233907420 -45.645329977 156.233845148 -45.645361628 156.233973585 -45.645482389
2022-12-03 23:06:11,976 - stpipe.Spec2Pipeline.extract_2d - INFO - Name of subarray extracted: 23
2022-12-03 23:06:11,977 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray x-extents are: 52 1525
2022-12-03 23:06:11,977 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray y-extents are: 116 133
2022-12-03 23:06:12,182 - stpipe.Spec2Pipeline.extract_2d - INFO - set slit_attributes completed
2022-12-03 23:06:12,191 - stpipe.Spec2Pipeline.extract_2d - INFO - Update S_REGION to POLYGON ICRS 156.221012951 -45.633191592 156.220885760 -45.633071703 156.220823726 -45.633103294 156.220950915 -45.633223183
2022-12-03 23:06:12,193 - stpipe.Spec2Pipeline.extract_2d - INFO - Updated S_REGION to POLYGON ICRS 156.221012951 -45.633191592 156.220885760 -45.633071703 156.220823726 -45.633103294 156.220950915 -45.633223183
2022-12-03 23:06:13,720 - stpipe.Spec2Pipeline.extract_2d - INFO - Name of subarray extracted: 24
2022-12-03 23:06:13,721 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray x-extents are: 69 1545
2022-12-03 23:06:13,721 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray y-extents are: 786 805
2022-12-03 23:06:13,932 - stpipe.Spec2Pipeline.extract_2d - INFO - set slit_attributes completed
2022-12-03 23:06:13,942 - stpipe.Spec2Pipeline.extract_2d - INFO - Update S_REGION to POLYGON ICRS 156.237444560 -45.648779316 156.237315772 -45.648658296 156.237253434 -45.648689968 156.237382219 -45.648810988
2022-12-03 23:06:13,943 - stpipe.Spec2Pipeline.extract_2d - INFO - Updated S_REGION to POLYGON ICRS 156.237444560 -45.648779316 156.237315772 -45.648658296 156.237253434 -45.648689968 156.237382219 -45.648810988
2022-12-03 23:06:14,843 - stpipe.Spec2Pipeline.extract_2d - INFO - Name of subarray extracted: 28
2022-12-03 23:06:14,844 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray x-extents are: 11 1485
2022-12-03 23:06:14,845 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray y-extents are: 661 679
2022-12-03 23:06:15,060 - stpipe.Spec2Pipeline.extract_2d - INFO - set slit_attributes completed
2022-12-03 23:06:15,070 - stpipe.Spec2Pipeline.extract_2d - INFO - Update S_REGION to POLYGON ICRS 156.232517711 -45.646764241 156.232389309 -45.646643431 156.232327062 -45.646675084 156.232455462 -45.646795894
2022-12-03 23:06:15,071 - stpipe.Spec2Pipeline.extract_2d - INFO - Updated S_REGION to POLYGON ICRS 156.232517711 -45.646764241 156.232389309 -45.646643431 156.232327062 -45.646675084 156.232455462 -45.646795894
2022-12-03 23:06:15,976 - stpipe.Spec2Pipeline.extract_2d - INFO - Name of subarray extracted: 30
2022-12-03 23:06:15,977 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray x-extents are: 0 1457
2022-12-03 23:06:15,978 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray y-extents are: 701 719
2022-12-03 23:06:17,009 - stpipe.Spec2Pipeline.extract_2d - INFO - set slit_attributes completed
2022-12-03 23:06:17,018 - stpipe.Spec2Pipeline.extract_2d - INFO - Update S_REGION to POLYGON ICRS 156.232568977 -45.648183467 156.232440513 -45.648062572 156.232378263 -45.648094230 156.232506725 -45.648215126
2022-12-03 23:06:17,019 - stpipe.Spec2Pipeline.extract_2d - INFO - Updated S_REGION to POLYGON ICRS 156.232568977 -45.648183467 156.232440513 -45.648062572 156.232378263 -45.648094230 156.232506725 -45.648215126
2022-12-03 23:06:17,907 - stpipe.Spec2Pipeline.extract_2d - INFO - Name of subarray extracted: 34
2022-12-03 23:06:17,908 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray x-extents are: 0 1394
2022-12-03 23:06:17,908 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray y-extents are: 717 734
2022-12-03 23:06:18,122 - stpipe.Spec2Pipeline.extract_2d - INFO - set slit_attributes completed
2022-12-03 23:06:18,131 - stpipe.Spec2Pipeline.extract_2d - INFO - Update S_REGION to POLYGON ICRS 156.230879662 -45.649585075 156.230751242 -45.649464125 156.230689019 -45.649495787 156.230817437 -45.649616737
2022-12-03 23:06:18,133 - stpipe.Spec2Pipeline.extract_2d - INFO - Updated S_REGION to POLYGON ICRS 156.230879662 -45.649585075 156.230751242 -45.649464125 156.230689019 -45.649495787 156.230817437 -45.649616737
2022-12-03 23:06:19,746 - stpipe.Spec2Pipeline.extract_2d - INFO - Name of subarray extracted: 36
2022-12-03 23:06:19,746 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray x-extents are: 0 1377
2022-12-03 23:06:19,747 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray y-extents are: 450 466
2022-12-03 23:06:19,948 - stpipe.Spec2Pipeline.extract_2d - INFO - set slit_attributes completed
2022-12-03 23:06:19,957 - stpipe.Spec2Pipeline.extract_2d - INFO - Update S_REGION to POLYGON ICRS 156.224033871 -45.643507774 156.223906106 -45.643387302 156.223844011 -45.643418924 156.223971774 -45.643539396
2022-12-03 23:06:19,958 - stpipe.Spec2Pipeline.extract_2d - INFO - Updated S_REGION to POLYGON ICRS 156.224033871 -45.643507774 156.223906106 -45.643387302 156.223844011 -45.643418924 156.223971774 -45.643539396
2022-12-03 23:06:20,866 - stpipe.Spec2Pipeline.extract_2d - INFO - Name of subarray extracted: 40
2022-12-03 23:06:20,867 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray x-extents are: 0 1343
2022-12-03 23:06:20,868 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray y-extents are: 218 234
2022-12-03 23:06:21,074 - stpipe.Spec2Pipeline.extract_2d - INFO - set slit_attributes completed
2022-12-03 23:06:21,083 - stpipe.Spec2Pipeline.extract_2d - INFO - Update S_REGION to POLYGON ICRS 156.217486084 -45.638574970 156.217358883 -45.638454874 156.217296902 -45.638486467 156.217424102 -45.638606563
2022-12-03 23:06:21,084 - stpipe.Spec2Pipeline.extract_2d - INFO - Updated S_REGION to POLYGON ICRS 156.217486084 -45.638574970 156.217358883 -45.638454874 156.217296902 -45.638486467 156.217424102 -45.638606563
2022-12-03 23:06:21,990 - stpipe.Spec2Pipeline.extract_2d - INFO - Name of subarray extracted: 42
2022-12-03 23:06:21,991 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray x-extents are: 0 1296
2022-12-03 23:06:21,992 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray y-extents are: 546 562
2022-12-03 23:06:22,198 - stpipe.Spec2Pipeline.extract_2d - INFO - set slit_attributes completed
2022-12-03 23:06:22,207 - stpipe.Spec2Pipeline.extract_2d - INFO - Update S_REGION to POLYGON ICRS 156.223646010 -45.647128995 156.223518121 -45.647008321 156.223456024 -45.647039957 156.223583911 -45.647160632
2022-12-03 23:06:22,209 - stpipe.Spec2Pipeline.extract_2d - INFO - Updated S_REGION to POLYGON ICRS 156.223646010 -45.647128995 156.223518121 -45.647008321 156.223456024 -45.647039957 156.223583911 -45.647160632
2022-12-03 23:06:24,015 - stpipe.Spec2Pipeline.extract_2d - INFO - Name of subarray extracted: 43
2022-12-03 23:06:24,016 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray x-extents are: 0 1246
2022-12-03 23:06:24,016 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray y-extents are: 415 430
2022-12-03 23:06:24,229 - stpipe.Spec2Pipeline.extract_2d - INFO - set slit_attributes completed
2022-12-03 23:06:24,239 - stpipe.Spec2Pipeline.extract_2d - INFO - Update S_REGION to POLYGON ICRS 156.218966486 -45.644829601 156.218838959 -45.644709141 156.218776943 -45.644740759 156.218904467 -45.644861220
2022-12-03 23:06:24,240 - stpipe.Spec2Pipeline.extract_2d - INFO - Updated S_REGION to POLYGON ICRS 156.218966486 -45.644829601 156.218838959 -45.644709141 156.218776943 -45.644740759 156.218904467 -45.644861220
2022-12-03 23:06:25,185 - stpipe.Spec2Pipeline.extract_2d - INFO - Name of subarray extracted: 44
2022-12-03 23:06:25,186 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray x-extents are: 0 1246
2022-12-03 23:06:25,186 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray y-extents are: 405 420
2022-12-03 23:06:25,394 - stpipe.Spec2Pipeline.extract_2d - INFO - set slit_attributes completed
2022-12-03 23:06:25,404 - stpipe.Spec2Pipeline.extract_2d - INFO - Update S_REGION to POLYGON ICRS 156.218718991 -45.644595818 156.218591488 -45.644475376 156.218529475 -45.644506992 156.218656977 -45.644627436
2022-12-03 23:06:25,406 - stpipe.Spec2Pipeline.extract_2d - INFO - Updated S_REGION to POLYGON ICRS 156.218718991 -45.644595818 156.218591488 -45.644475376 156.218529475 -45.644506992 156.218656977 -45.644627436
2022-12-03 23:06:27,142 - stpipe.Spec2Pipeline.extract_2d - INFO - Name of subarray extracted: 45
2022-12-03 23:06:27,142 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray x-extents are: 0 1185
2022-12-03 23:06:27,143 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray y-extents are: 531 546
2022-12-03 23:06:27,351 - stpipe.Spec2Pipeline.extract_2d - INFO - set slit_attributes completed
2022-12-03 23:06:27,361 - stpipe.Spec2Pipeline.extract_2d - INFO - Update S_REGION to POLYGON ICRS 156.219673020 -45.648613077 156.219545303 -45.648492383 156.219483265 -45.648524021 156.219610979 -45.648644716
2022-12-03 23:06:27,362 - stpipe.Spec2Pipeline.extract_2d - INFO - Updated S_REGION to POLYGON ICRS 156.219673020 -45.648613077 156.219545303 -45.648492383 156.219483265 -45.648524021 156.219610979 -45.648644716
2022-12-03 23:06:28,249 - stpipe.Spec2Pipeline.extract_2d - INFO - Name of subarray extracted: 46
2022-12-03 23:06:28,250 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray x-extents are: 0 1158
2022-12-03 23:06:28,251 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray y-extents are: 203 218
2022-12-03 23:06:28,459 - stpipe.Spec2Pipeline.extract_2d - INFO - set slit_attributes completed
2022-12-03 23:06:28,468 - stpipe.Spec2Pipeline.extract_2d - INFO - Update S_REGION to POLYGON ICRS 156.211127421 -45.641279813 156.211000463 -45.641159678 156.210938572 -45.641191268 156.211065527 -45.641311404
2022-12-03 23:06:28,470 - stpipe.Spec2Pipeline.extract_2d - INFO - Updated S_REGION to POLYGON ICRS 156.211127421 -45.641279813 156.211000463 -45.641159678 156.210938572 -45.641191268 156.211065527 -45.641311404
2022-12-03 23:06:30,211 - stpipe.Spec2Pipeline.extract_2d - INFO - Name of subarray extracted: 47
2022-12-03 23:06:30,212 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray x-extents are: 0 1091
2022-12-03 23:06:30,213 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray y-extents are: 567 581
2022-12-03 23:06:30,416 - stpipe.Spec2Pipeline.extract_2d - INFO - set slit_attributes completed
2022-12-03 23:06:30,425 - stpipe.Spec2Pipeline.extract_2d - INFO - Update S_REGION to POLYGON ICRS 156.217456055 -45.651006881 156.217328370 -45.650886079 156.217266356 -45.650917729 156.217394038 -45.651038531
2022-12-03 23:06:30,427 - stpipe.Spec2Pipeline.extract_2d - INFO - Updated S_REGION to POLYGON ICRS 156.217456055 -45.651006881 156.217328370 -45.650886079 156.217266356 -45.650917729 156.217394038 -45.651038531
2022-12-03 23:06:31,316 - stpipe.Spec2Pipeline.extract_2d - INFO - Name of subarray extracted: 48
2022-12-03 23:06:31,317 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray x-extents are: 0 1091
2022-12-03 23:06:31,317 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray y-extents are: 562 576
2022-12-03 23:06:31,528 - stpipe.Spec2Pipeline.extract_2d - INFO - set slit_attributes completed
2022-12-03 23:06:31,538 - stpipe.Spec2Pipeline.extract_2d - INFO - Update S_REGION to POLYGON ICRS 156.217332149 -45.650889654 156.217204477 -45.650768862 156.217142464 -45.650800511 156.217270135 -45.650921304
2022-12-03 23:06:31,540 - stpipe.Spec2Pipeline.extract_2d - INFO - Updated S_REGION to POLYGON ICRS 156.217332149 -45.650889654 156.217204477 -45.650768862 156.217142464 -45.650800511 156.217270135 -45.650921304
2022-12-03 23:06:33,269 - stpipe.Spec2Pipeline.extract_2d - INFO - Name of subarray extracted: 49
2022-12-03 23:06:33,270 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray x-extents are: 0 1067
2022-12-03 23:06:33,270 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray y-extents are: 633 647
2022-12-03 23:06:33,475 - stpipe.Spec2Pipeline.extract_2d - INFO - set slit_attributes completed
2022-12-03 23:06:33,484 - stpipe.Spec2Pipeline.extract_2d - INFO - Update S_REGION to POLYGON ICRS 156.218210913 -45.652969013 156.218083107 -45.652848076 156.218021073 -45.652879740 156.218148877 -45.653000678
2022-12-03 23:06:33,486 - stpipe.Spec2Pipeline.extract_2d - INFO - Updated S_REGION to POLYGON ICRS 156.218210913 -45.652969013 156.218083107 -45.652848076 156.218021073 -45.652879740 156.218148877 -45.653000678
2022-12-03 23:06:34,389 - stpipe.Spec2Pipeline.extract_2d - INFO - Name of subarray extracted: 50
2022-12-03 23:06:34,390 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray x-extents are: 0 1048
2022-12-03 23:06:34,390 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray y-extents are: 239 253
2022-12-03 23:06:34,602 - stpipe.Spec2Pipeline.extract_2d - INFO - set slit_attributes completed
2022-12-03 23:06:34,611 - stpipe.Spec2Pipeline.extract_2d - INFO - Update S_REGION to POLYGON ICRS 156.208399869 -45.643929179 156.208272959 -45.643808942 156.208211096 -45.643840541 156.208338005 -45.643960778
2022-12-03 23:06:34,612 - stpipe.Spec2Pipeline.extract_2d - INFO - Updated S_REGION to POLYGON ICRS 156.208399869 -45.643929179 156.208272959 -45.643808942 156.208211096 -45.643840541 156.208338005 -45.643960778
2022-12-03 23:06:36,406 - stpipe.Spec2Pipeline.extract_2d - INFO - Name of subarray extracted: 51
2022-12-03 23:06:36,407 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray x-extents are: 0 1034
2022-12-03 23:06:36,407 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray y-extents are: 431 445
2022-12-03 23:06:36,604 - stpipe.Spec2Pipeline.extract_2d - INFO - set slit_attributes completed
2022-12-03 23:06:36,614 - stpipe.Spec2Pipeline.extract_2d - INFO - Update S_REGION to POLYGON ICRS 156.212403238 -45.648718689 156.212275928 -45.648598111 156.212213993 -45.648629742 156.212341301 -45.648750320
2022-12-03 23:06:36,615 - stpipe.Spec2Pipeline.extract_2d - INFO - Updated S_REGION to POLYGON ICRS 156.212403238 -45.648718689 156.212275928 -45.648598111 156.212213993 -45.648629742 156.212341301 -45.648750320
2022-12-03 23:06:37,508 - stpipe.Spec2Pipeline.extract_2d - INFO - Name of subarray extracted: 52
2022-12-03 23:06:37,509 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray x-extents are: 0 998
2022-12-03 23:06:37,509 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray y-extents are: 804 818
2022-12-03 23:06:37,721 - stpipe.Spec2Pipeline.extract_2d - INFO - set slit_attributes completed
2022-12-03 23:06:37,730 - stpipe.Spec2Pipeline.extract_2d - INFO - Update S_REGION to POLYGON ICRS 156.219947139 -45.658234585 156.219819020 -45.658113276 156.219756938 -45.658144979 156.219885055 -45.658266289
2022-12-03 23:06:37,732 - stpipe.Spec2Pipeline.extract_2d - INFO - Updated S_REGION to POLYGON ICRS 156.219947139 -45.658234585 156.219819020 -45.658113276 156.219756938 -45.658144979 156.219885055 -45.658266289
2022-12-03 23:06:38,624 - stpipe.Spec2Pipeline.extract_2d - INFO - Name of subarray extracted: 55
2022-12-03 23:06:38,625 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray x-extents are: 0 297
2022-12-03 23:06:38,625 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray y-extents are: 1416 1426
2022-12-03 23:06:38,826 - stpipe.Spec2Pipeline.extract_2d - INFO - set slit_attributes completed
2022-12-03 23:06:38,835 - stpipe.Spec2Pipeline.extract_2d - INFO - Update S_REGION to POLYGON ICRS 156.211226719 -45.684941334 156.211098073 -45.684818233 156.211035880 -45.684850241 156.211164524 -45.684973343
2022-12-03 23:06:38,836 - stpipe.Spec2Pipeline.extract_2d - INFO - Updated S_REGION to POLYGON ICRS 156.211226719 -45.684941334 156.211098073 -45.684818233 156.211035880 -45.684850241 156.211164524 -45.684973343
2022-12-03 23:06:40,579 - stpipe.Spec2Pipeline.extract_2d - INFO - Name of subarray extracted: 56
2022-12-03 23:06:40,580 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray x-extents are: 0 143
2022-12-03 23:06:40,581 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray y-extents are: 769 778
2022-12-03 23:06:40,777 - stpipe.Spec2Pipeline.extract_2d - INFO - set slit_attributes completed
2022-12-03 23:06:40,787 - stpipe.Spec2Pipeline.extract_2d - INFO - Update S_REGION to POLYGON ICRS 156.191122501 -45.671742959 156.190995485 -45.671621176 156.190933579 -45.671653049 156.191060593 -45.671774833
2022-12-03 23:06:40,788 - stpipe.Spec2Pipeline.extract_2d - INFO - Updated S_REGION to POLYGON ICRS 156.191122501 -45.671742959 156.190995485 -45.671621176 156.190933579 -45.671653049 156.191060593 -45.671774833
2022-12-03 23:06:41,666 - stpipe.Spec2Pipeline.extract_2d - INFO - Name of subarray extracted: 57
2022-12-03 23:06:41,666 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray x-extents are: 0 74
2022-12-03 23:06:41,667 - stpipe.Spec2Pipeline.extract_2d - INFO - Subarray y-extents are: 355 365
2022-12-03 23:06:41,863 - stpipe.Spec2Pipeline.extract_2d - INFO - set slit_attributes completed
2022-12-03 23:06:41,872 - stpipe.Spec2Pipeline.extract_2d - INFO - Update S_REGION to POLYGON ICRS 156.179343124 -45.662963603 156.179216994 -45.662842617 156.179155236 -45.662874401 156.179281365 -45.662995389
2022-12-03 23:06:41,873 - stpipe.Spec2Pipeline.extract_2d - INFO - Updated S_REGION to POLYGON ICRS 156.179343124 -45.662963603 156.179216994 -45.662842617 156.179155236 -45.662874401 156.179281365 -45.662995389
2022-12-03 23:06:45,800 - stpipe.Spec2Pipeline.extract_2d - INFO - Step extract_2d done
2022-12-03 23:06:46,609 - stpipe.Spec2Pipeline.srctype - INFO - Step srctype running with args (<MultiSlitModel from mos_g140m_line1_NRS2_uncal.fits>,).
2022-12-03 23:06:46,610 - stpipe.Spec2Pipeline.srctype - INFO - Step srctype parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'source_type': None}
2022-12-03 23:06:46,618 - stpipe.Spec2Pipeline.srctype - INFO - Input EXP_TYPE is NRS_MSASPEC
2022-12-03 23:06:46,619 - stpipe.Spec2Pipeline.srctype - INFO - source_id=6, stellarity=0.0000, type=EXTENDED
2022-12-03 23:06:46,620 - stpipe.Spec2Pipeline.srctype - INFO - source_id=7, stellarity=0.0000, type=EXTENDED
2022-12-03 23:06:46,621 - stpipe.Spec2Pipeline.srctype - INFO - source_id=8, stellarity=0.0000, type=EXTENDED
2022-12-03 23:06:46,622 - stpipe.Spec2Pipeline.srctype - INFO - source_id=9, stellarity=0.0000, type=EXTENDED
2022-12-03 23:06:46,624 - stpipe.Spec2Pipeline.srctype - INFO - source_id=10, stellarity=0.0000, type=EXTENDED
2022-12-03 23:06:46,625 - stpipe.Spec2Pipeline.srctype - INFO - source_id=11, stellarity=0.0000, type=EXTENDED
2022-12-03 23:06:46,626 - stpipe.Spec2Pipeline.srctype - INFO - source_id=14, stellarity=0.0000, type=EXTENDED
2022-12-03 23:06:46,627 - stpipe.Spec2Pipeline.srctype - INFO - source_id=15, stellarity=0.0000, type=EXTENDED
2022-12-03 23:06:46,628 - stpipe.Spec2Pipeline.srctype - INFO - source_id=16, stellarity=0.0000, type=EXTENDED
2022-12-03 23:06:46,629 - stpipe.Spec2Pipeline.srctype - INFO - source_id=17, stellarity=0.0000, type=EXTENDED
2022-12-03 23:06:46,630 - stpipe.Spec2Pipeline.srctype - INFO - source_id=18, stellarity=0.0000, type=EXTENDED
2022-12-03 23:06:46,631 - stpipe.Spec2Pipeline.srctype - INFO - source_id=19, stellarity=0.0000, type=EXTENDED
2022-12-03 23:06:46,632 - stpipe.Spec2Pipeline.srctype - INFO - source_id=21, stellarity=0.0000, type=EXTENDED
2022-12-03 23:06:46,634 - stpipe.Spec2Pipeline.srctype - INFO - source_id=25, stellarity=0.0000, type=EXTENDED
2022-12-03 23:06:46,635 - stpipe.Spec2Pipeline.srctype - INFO - source_id=26, stellarity=0.0000, type=EXTENDED
2022-12-03 23:06:46,636 - stpipe.Spec2Pipeline.srctype - INFO - source_id=27, stellarity=0.0000, type=EXTENDED
2022-12-03 23:06:46,637 - stpipe.Spec2Pipeline.srctype - INFO - source_id=29, stellarity=0.0000, type=EXTENDED
2022-12-03 23:06:46,638 - stpipe.Spec2Pipeline.srctype - INFO - source_id=31, stellarity=0.0000, type=EXTENDED
2022-12-03 23:06:46,639 - stpipe.Spec2Pipeline.srctype - INFO - source_id=32, stellarity=0.0000, type=EXTENDED
2022-12-03 23:06:46,640 - stpipe.Spec2Pipeline.srctype - INFO - source_id=33, stellarity=0.0000, type=EXTENDED
2022-12-03 23:06:46,641 - stpipe.Spec2Pipeline.srctype - INFO - source_id=35, stellarity=0.0000, type=EXTENDED
2022-12-03 23:06:46,643 - stpipe.Spec2Pipeline.srctype - INFO - source_id=37, stellarity=0.0000, type=EXTENDED
2022-12-03 23:06:46,644 - stpipe.Spec2Pipeline.srctype - INFO - source_id=38, stellarity=0.0000, type=EXTENDED
2022-12-03 23:06:46,645 - stpipe.Spec2Pipeline.srctype - INFO - source_id=39, stellarity=0.0000, type=EXTENDED
2022-12-03 23:06:46,646 - stpipe.Spec2Pipeline.srctype - INFO - source_id=41, stellarity=0.0000, type=EXTENDED
2022-12-03 23:06:46,647 - stpipe.Spec2Pipeline.srctype - INFO - source_id=53, stellarity=0.0000, type=EXTENDED
2022-12-03 23:06:46,648 - stpipe.Spec2Pipeline.srctype - INFO - source_id=54, stellarity=0.0000, type=EXTENDED
2022-12-03 23:06:46,649 - stpipe.Spec2Pipeline.srctype - INFO - source_id=1, stellarity=0.0000, type=EXTENDED
2022-12-03 23:06:46,650 - stpipe.Spec2Pipeline.srctype - INFO - source_id=2, stellarity=0.0000, type=EXTENDED
2022-12-03 23:06:46,651 - stpipe.Spec2Pipeline.srctype - INFO - source_id=3, stellarity=0.0000, type=EXTENDED
2022-12-03 23:06:46,652 - stpipe.Spec2Pipeline.srctype - INFO - source_id=4, stellarity=0.0000, type=EXTENDED
2022-12-03 23:06:46,653 - stpipe.Spec2Pipeline.srctype - INFO - source_id=5, stellarity=0.0000, type=EXTENDED
2022-12-03 23:06:46,654 - stpipe.Spec2Pipeline.srctype - INFO - source_id=12, stellarity=0.0000, type=EXTENDED
2022-12-03 23:06:46,655 - stpipe.Spec2Pipeline.srctype - INFO - source_id=13, stellarity=0.0000, type=EXTENDED
2022-12-03 23:06:46,657 - stpipe.Spec2Pipeline.srctype - INFO - source_id=20, stellarity=0.0000, type=EXTENDED
2022-12-03 23:06:46,658 - stpipe.Spec2Pipeline.srctype - INFO - source_id=22, stellarity=0.0000, type=EXTENDED
2022-12-03 23:06:46,659 - stpipe.Spec2Pipeline.srctype - INFO - source_id=23, stellarity=0.0000, type=EXTENDED
2022-12-03 23:06:46,660 - stpipe.Spec2Pipeline.srctype - INFO - source_id=24, stellarity=0.0000, type=EXTENDED
2022-12-03 23:06:46,661 - stpipe.Spec2Pipeline.srctype - INFO - source_id=28, stellarity=0.0000, type=EXTENDED
2022-12-03 23:06:46,662 - stpipe.Spec2Pipeline.srctype - INFO - source_id=30, stellarity=0.0000, type=EXTENDED
2022-12-03 23:06:46,663 - stpipe.Spec2Pipeline.srctype - INFO - source_id=34, stellarity=0.0000, type=EXTENDED
2022-12-03 23:06:46,664 - stpipe.Spec2Pipeline.srctype - INFO - source_id=36, stellarity=0.0000, type=EXTENDED
2022-12-03 23:06:46,665 - stpipe.Spec2Pipeline.srctype - INFO - source_id=40, stellarity=0.0000, type=EXTENDED
2022-12-03 23:06:46,667 - stpipe.Spec2Pipeline.srctype - INFO - source_id=42, stellarity=0.0000, type=EXTENDED
2022-12-03 23:06:46,668 - stpipe.Spec2Pipeline.srctype - INFO - source_id=43, stellarity=0.0000, type=EXTENDED
2022-12-03 23:06:46,669 - stpipe.Spec2Pipeline.srctype - INFO - source_id=44, stellarity=0.0000, type=EXTENDED
2022-12-03 23:06:46,670 - stpipe.Spec2Pipeline.srctype - INFO - source_id=45, stellarity=0.0000, type=EXTENDED
2022-12-03 23:06:46,671 - stpipe.Spec2Pipeline.srctype - INFO - source_id=46, stellarity=0.0000, type=EXTENDED
2022-12-03 23:06:46,672 - stpipe.Spec2Pipeline.srctype - INFO - source_id=47, stellarity=0.0000, type=EXTENDED
2022-12-03 23:06:46,673 - stpipe.Spec2Pipeline.srctype - INFO - source_id=48, stellarity=0.0000, type=EXTENDED
2022-12-03 23:06:46,674 - stpipe.Spec2Pipeline.srctype - INFO - source_id=49, stellarity=0.0000, type=EXTENDED
2022-12-03 23:06:46,675 - stpipe.Spec2Pipeline.srctype - INFO - source_id=50, stellarity=0.0000, type=EXTENDED
2022-12-03 23:06:46,677 - stpipe.Spec2Pipeline.srctype - INFO - source_id=51, stellarity=0.0000, type=EXTENDED
2022-12-03 23:06:46,678 - stpipe.Spec2Pipeline.srctype - INFO - source_id=52, stellarity=0.0000, type=EXTENDED
2022-12-03 23:06:46,679 - stpipe.Spec2Pipeline.srctype - INFO - source_id=55, stellarity=0.0000, type=EXTENDED
2022-12-03 23:06:46,680 - stpipe.Spec2Pipeline.srctype - INFO - source_id=56, stellarity=0.0000, type=EXTENDED
2022-12-03 23:06:46,681 - stpipe.Spec2Pipeline.srctype - INFO - source_id=57, stellarity=0.0000, type=EXTENDED
2022-12-03 23:06:46,684 - stpipe.Spec2Pipeline.srctype - INFO - Step srctype done
2022-12-03 23:06:47,447 - stpipe.Spec2Pipeline.master_background_mos - INFO - Step master_background_mos running with args (<MultiSlitModel from mos_g140m_line1_NRS2_uncal.fits>,).
2022-12-03 23:06:47,455 - stpipe.Spec2Pipeline.master_background_mos - INFO - Step master_background_mos parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': True, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'force_subtract': False, 'save_background': False, 'user_background': None, 'inverse': False, 'steps': {'flat_field': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'save_interpolated_flat': False, 'user_supplied_flat': None, 'inverse': False}, 'pathloss': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'inverse': False, 'source_type': None}, 'barshadow': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'inverse': False, 'source_type': None}, 'photom': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'inverse': False, 'source_type': None}}}
2022-12-03 23:06:47,464 - stpipe.Spec2Pipeline.master_background_mos - WARNING - No background slits available for creating master background. Skipping
2022-12-03 23:06:47,464 - stpipe.Spec2Pipeline.master_background_mos - INFO - Results used CRDS context: jwst_1019.pmap
2022-12-03 23:06:47,465 - stpipe.Spec2Pipeline.master_background_mos - INFO - Step master_background_mos done
2022-12-03 23:06:48,170 - stpipe.Spec2Pipeline.wavecorr - INFO - Step wavecorr running with args (<MultiSlitModel from mos_g140m_line1_NRS2_uncal.fits>,).
2022-12-03 23:06:48,171 - stpipe.Spec2Pipeline.wavecorr - INFO - Step wavecorr parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': ''}
2022-12-03 23:06:51,405 - stpipe.Spec2Pipeline.wavecorr - INFO - Using WAVECORR reference file /grp/crds/cache/references/jwst/jwst_nirspec_wavecorr_0004.asdf
2022-12-03 23:07:03,258 - stpipe.Spec2Pipeline.wavecorr - INFO - Detected a EXTENDED source type in slit 6
2022-12-03 23:07:03,259 - stpipe.Spec2Pipeline.wavecorr - INFO - Detected a EXTENDED source type in slit 7
2022-12-03 23:07:03,260 - stpipe.Spec2Pipeline.wavecorr - INFO - Detected a EXTENDED source type in slit 8
2022-12-03 23:07:03,260 - stpipe.Spec2Pipeline.wavecorr - INFO - Detected a EXTENDED source type in slit 9
2022-12-03 23:07:03,260 - stpipe.Spec2Pipeline.wavecorr - INFO - Detected a EXTENDED source type in slit 10
2022-12-03 23:07:03,261 - stpipe.Spec2Pipeline.wavecorr - INFO - Detected a EXTENDED source type in slit 11
2022-12-03 23:07:03,261 - stpipe.Spec2Pipeline.wavecorr - INFO - Detected a EXTENDED source type in slit 14
2022-12-03 23:07:03,262 - stpipe.Spec2Pipeline.wavecorr - INFO - Detected a EXTENDED source type in slit 15
2022-12-03 23:07:03,262 - stpipe.Spec2Pipeline.wavecorr - INFO - Detected a EXTENDED source type in slit 16
2022-12-03 23:07:03,262 - stpipe.Spec2Pipeline.wavecorr - INFO - Detected a EXTENDED source type in slit 17
2022-12-03 23:07:03,262 - stpipe.Spec2Pipeline.wavecorr - INFO - Detected a EXTENDED source type in slit 18
2022-12-03 23:07:03,263 - stpipe.Spec2Pipeline.wavecorr - INFO - Detected a EXTENDED source type in slit 19
2022-12-03 23:07:03,263 - stpipe.Spec2Pipeline.wavecorr - INFO - Detected a EXTENDED source type in slit 21
2022-12-03 23:07:03,264 - stpipe.Spec2Pipeline.wavecorr - INFO - Detected a EXTENDED source type in slit 25
2022-12-03 23:07:03,265 - stpipe.Spec2Pipeline.wavecorr - INFO - Detected a EXTENDED source type in slit 26
2022-12-03 23:07:03,266 - stpipe.Spec2Pipeline.wavecorr - INFO - Detected a EXTENDED source type in slit 27
2022-12-03 23:07:03,266 - stpipe.Spec2Pipeline.wavecorr - INFO - Detected a EXTENDED source type in slit 29
2022-12-03 23:07:03,267 - stpipe.Spec2Pipeline.wavecorr - INFO - Detected a EXTENDED source type in slit 31
2022-12-03 23:07:03,268 - stpipe.Spec2Pipeline.wavecorr - INFO - Detected a EXTENDED source type in slit 32
2022-12-03 23:07:03,268 - stpipe.Spec2Pipeline.wavecorr - INFO - Detected a EXTENDED source type in slit 33
2022-12-03 23:07:03,269 - stpipe.Spec2Pipeline.wavecorr - INFO - Detected a EXTENDED source type in slit 35
2022-12-03 23:07:03,269 - stpipe.Spec2Pipeline.wavecorr - INFO - Detected a EXTENDED source type in slit 37
2022-12-03 23:07:03,270 - stpipe.Spec2Pipeline.wavecorr - INFO - Detected a EXTENDED source type in slit 38
2022-12-03 23:07:03,270 - stpipe.Spec2Pipeline.wavecorr - INFO - Detected a EXTENDED source type in slit 39
2022-12-03 23:07:03,271 - stpipe.Spec2Pipeline.wavecorr - INFO - Detected a EXTENDED source type in slit 41
2022-12-03 23:07:03,271 - stpipe.Spec2Pipeline.wavecorr - INFO - Detected a EXTENDED source type in slit 53
2022-12-03 23:07:03,272 - stpipe.Spec2Pipeline.wavecorr - INFO - Detected a EXTENDED source type in slit 54
2022-12-03 23:07:03,272 - stpipe.Spec2Pipeline.wavecorr - INFO - Detected a EXTENDED source type in slit 1
2022-12-03 23:07:03,272 - stpipe.Spec2Pipeline.wavecorr - INFO - Detected a EXTENDED source type in slit 2
2022-12-03 23:07:03,272 - stpipe.Spec2Pipeline.wavecorr - INFO - Detected a EXTENDED source type in slit 3
2022-12-03 23:07:03,273 - stpipe.Spec2Pipeline.wavecorr - INFO - Detected a EXTENDED source type in slit 4
2022-12-03 23:07:03,273 - stpipe.Spec2Pipeline.wavecorr - INFO - Detected a EXTENDED source type in slit 5
2022-12-03 23:07:03,273 - stpipe.Spec2Pipeline.wavecorr - INFO - Detected a EXTENDED source type in slit 12
2022-12-03 23:07:03,274 - stpipe.Spec2Pipeline.wavecorr - INFO - Detected a EXTENDED source type in slit 13
2022-12-03 23:07:03,274 - stpipe.Spec2Pipeline.wavecorr - INFO - Detected a EXTENDED source type in slit 20
2022-12-03 23:07:03,274 - stpipe.Spec2Pipeline.wavecorr - INFO - Detected a EXTENDED source type in slit 22
2022-12-03 23:07:03,275 - stpipe.Spec2Pipeline.wavecorr - INFO - Detected a EXTENDED source type in slit 23
2022-12-03 23:07:03,275 - stpipe.Spec2Pipeline.wavecorr - INFO - Detected a EXTENDED source type in slit 24
2022-12-03 23:07:03,275 - stpipe.Spec2Pipeline.wavecorr - INFO - Detected a EXTENDED source type in slit 28
2022-12-03 23:07:03,275 - stpipe.Spec2Pipeline.wavecorr - INFO - Detected a EXTENDED source type in slit 30
2022-12-03 23:07:03,276 - stpipe.Spec2Pipeline.wavecorr - INFO - Detected a EXTENDED source type in slit 34
2022-12-03 23:07:03,276 - stpipe.Spec2Pipeline.wavecorr - INFO - Detected a EXTENDED source type in slit 36
2022-12-03 23:07:03,276 - stpipe.Spec2Pipeline.wavecorr - INFO - Detected a EXTENDED source type in slit 40
2022-12-03 23:07:03,277 - stpipe.Spec2Pipeline.wavecorr - INFO - Detected a EXTENDED source type in slit 42
2022-12-03 23:07:03,277 - stpipe.Spec2Pipeline.wavecorr - INFO - Detected a EXTENDED source type in slit 43
2022-12-03 23:07:03,278 - stpipe.Spec2Pipeline.wavecorr - INFO - Detected a EXTENDED source type in slit 44
2022-12-03 23:07:03,278 - stpipe.Spec2Pipeline.wavecorr - INFO - Detected a EXTENDED source type in slit 45
2022-12-03 23:07:03,279 - stpipe.Spec2Pipeline.wavecorr - INFO - Detected a EXTENDED source type in slit 46
2022-12-03 23:07:03,279 - stpipe.Spec2Pipeline.wavecorr - INFO - Detected a EXTENDED source type in slit 47
2022-12-03 23:07:03,280 - stpipe.Spec2Pipeline.wavecorr - INFO - Detected a EXTENDED source type in slit 48
2022-12-03 23:07:03,280 - stpipe.Spec2Pipeline.wavecorr - INFO - Detected a EXTENDED source type in slit 49
2022-12-03 23:07:03,281 - stpipe.Spec2Pipeline.wavecorr - INFO - Detected a EXTENDED source type in slit 50
2022-12-03 23:07:03,282 - stpipe.Spec2Pipeline.wavecorr - INFO - Detected a EXTENDED source type in slit 51
2022-12-03 23:07:03,282 - stpipe.Spec2Pipeline.wavecorr - INFO - Detected a EXTENDED source type in slit 52
2022-12-03 23:07:03,283 - stpipe.Spec2Pipeline.wavecorr - INFO - Detected a EXTENDED source type in slit 55
2022-12-03 23:07:03,283 - stpipe.Spec2Pipeline.wavecorr - INFO - Detected a EXTENDED source type in slit 56
2022-12-03 23:07:03,284 - stpipe.Spec2Pipeline.wavecorr - INFO - Detected a EXTENDED source type in slit 57
2022-12-03 23:07:03,288 - stpipe.Spec2Pipeline.wavecorr - INFO - Step wavecorr done
2022-12-03 23:07:04,723 - stpipe.Spec2Pipeline.flat_field - INFO - Step flat_field running with args (<MultiSlitModel from mos_g140m_line1_NRS2_uncal.fits>,).
2022-12-03 23:07:04,727 - stpipe.Spec2Pipeline.flat_field - INFO - Step flat_field parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'save_interpolated_flat': True, 'user_supplied_flat': None, 'inverse': False}
2022-12-03 23:07:49,070 - stpipe.Spec2Pipeline.flat_field - INFO - Working on slit 6
2022-12-03 23:07:51,280 - stpipe.Spec2Pipeline.flat_field - INFO - Working on slit 7
2022-12-03 23:07:53,483 - stpipe.Spec2Pipeline.flat_field - INFO - Working on slit 8
2022-12-03 23:07:55,671 - stpipe.Spec2Pipeline.flat_field - INFO - Working on slit 9
2022-12-03 23:07:57,840 - stpipe.Spec2Pipeline.flat_field - INFO - Working on slit 10
2022-12-03 23:08:00,051 - stpipe.Spec2Pipeline.flat_field - INFO - Working on slit 11
2022-12-03 23:08:02,255 - stpipe.Spec2Pipeline.flat_field - INFO - Working on slit 14
2022-12-03 23:08:04,502 - stpipe.Spec2Pipeline.flat_field - INFO - Working on slit 15
2022-12-03 23:08:06,791 - stpipe.Spec2Pipeline.flat_field - INFO - Working on slit 16
2022-12-03 23:08:09,046 - stpipe.Spec2Pipeline.flat_field - INFO - Working on slit 17
2022-12-03 23:08:11,281 - stpipe.Spec2Pipeline.flat_field - INFO - Working on slit 18
2022-12-03 23:08:13,548 - stpipe.Spec2Pipeline.flat_field - INFO - Working on slit 19
2022-12-03 23:08:15,801 - stpipe.Spec2Pipeline.flat_field - INFO - Working on slit 21
2022-12-03 23:08:18,086 - stpipe.Spec2Pipeline.flat_field - INFO - Working on slit 25
2022-12-03 23:08:20,296 - stpipe.Spec2Pipeline.flat_field - INFO - Working on slit 26
2022-12-03 23:08:22,524 - stpipe.Spec2Pipeline.flat_field - INFO - Working on slit 27
2022-12-03 23:08:24,751 - stpipe.Spec2Pipeline.flat_field - INFO - Working on slit 29
2022-12-03 23:08:26,956 - stpipe.Spec2Pipeline.flat_field - INFO - Working on slit 31
2022-12-03 23:08:29,134 - stpipe.Spec2Pipeline.flat_field - INFO - Working on slit 32
2022-12-03 23:08:32,377 - stpipe.Spec2Pipeline.flat_field - INFO - Working on slit 33
2022-12-03 23:08:34,540 - stpipe.Spec2Pipeline.flat_field - INFO - Working on slit 35
2022-12-03 23:08:36,731 - stpipe.Spec2Pipeline.flat_field - INFO - Working on slit 37
2022-12-03 23:08:38,889 - stpipe.Spec2Pipeline.flat_field - INFO - Working on slit 38
2022-12-03 23:08:41,041 - stpipe.Spec2Pipeline.flat_field - INFO - Working on slit 39
2022-12-03 23:08:43,158 - stpipe.Spec2Pipeline.flat_field - INFO - Working on slit 41
2022-12-03 23:08:45,254 - stpipe.Spec2Pipeline.flat_field - INFO - Working on slit 53
2022-12-03 23:08:46,526 - stpipe.Spec2Pipeline.flat_field - INFO - Working on slit 54
2022-12-03 23:08:47,800 - stpipe.Spec2Pipeline.flat_field - INFO - Working on slit 1
2022-12-03 23:08:50,018 - stpipe.Spec2Pipeline.flat_field - INFO - Working on slit 2
2022-12-03 23:08:52,199 - stpipe.Spec2Pipeline.flat_field - INFO - Working on slit 3
2022-12-03 23:08:54,448 - stpipe.Spec2Pipeline.flat_field - INFO - Working on slit 4
2022-12-03 23:08:56,691 - stpipe.Spec2Pipeline.flat_field - INFO - Working on slit 5
2022-12-03 23:08:58,888 - stpipe.Spec2Pipeline.flat_field - INFO - Working on slit 12
2022-12-03 23:09:01,080 - stpipe.Spec2Pipeline.flat_field - INFO - Working on slit 13
2022-12-03 23:09:03,271 - stpipe.Spec2Pipeline.flat_field - INFO - Working on slit 20
2022-12-03 23:09:05,528 - stpipe.Spec2Pipeline.flat_field - INFO - Working on slit 22
2022-12-03 23:09:07,713 - stpipe.Spec2Pipeline.flat_field - INFO - Working on slit 23
2022-12-03 23:09:09,872 - stpipe.Spec2Pipeline.flat_field - INFO - Working on slit 24
2022-12-03 23:09:12,047 - stpipe.Spec2Pipeline.flat_field - INFO - Working on slit 28
2022-12-03 23:09:14,204 - stpipe.Spec2Pipeline.flat_field - INFO - Working on slit 30
2022-12-03 23:09:16,380 - stpipe.Spec2Pipeline.flat_field - INFO - Working on slit 34
2022-12-03 23:09:18,424 - stpipe.Spec2Pipeline.flat_field - INFO - Working on slit 36
2022-12-03 23:09:20,450 - stpipe.Spec2Pipeline.flat_field - INFO - Working on slit 40
2022-12-03 23:09:22,434 - stpipe.Spec2Pipeline.flat_field - INFO - Working on slit 42
2022-12-03 23:09:24,354 - stpipe.Spec2Pipeline.flat_field - INFO - Working on slit 43
2022-12-03 23:09:26,198 - stpipe.Spec2Pipeline.flat_field - INFO - Working on slit 44
2022-12-03 23:09:28,039 - stpipe.Spec2Pipeline.flat_field - INFO - Working on slit 45
2022-12-03 23:09:29,823 - stpipe.Spec2Pipeline.flat_field - INFO - Working on slit 46
2022-12-03 23:09:31,569 - stpipe.Spec2Pipeline.flat_field - INFO - Working on slit 47
2022-12-03 23:09:33,206 - stpipe.Spec2Pipeline.flat_field - INFO - Working on slit 48
2022-12-03 23:09:34,854 - stpipe.Spec2Pipeline.flat_field - INFO - Working on slit 49
2022-12-03 23:09:36,474 - stpipe.Spec2Pipeline.flat_field - INFO - Working on slit 50
2022-12-03 23:09:38,060 - stpipe.Spec2Pipeline.flat_field - INFO - Working on slit 51
2022-12-03 23:09:39,614 - stpipe.Spec2Pipeline.flat_field - INFO - Working on slit 52
2022-12-03 23:09:41,137 - stpipe.Spec2Pipeline.flat_field - INFO - Working on slit 55
2022-12-03 23:09:41,652 - stpipe.Spec2Pipeline.flat_field - INFO - Working on slit 56
2022-12-03 23:09:41,992 - stpipe.Spec2Pipeline.flat_field - INFO - Working on slit 57
2022-12-03 23:10:01,675 - stpipe.Spec2Pipeline.flat_field - INFO - Saved model in mos_g140m_line1_NRS2_interpolatedflat.fits
2022-12-03 23:10:01,676 - stpipe.Spec2Pipeline.flat_field - INFO - Interpolated flat written to "mos_g140m_line1_NRS2_interpolatedflat.fits".
2022-12-03 23:10:01,682 - stpipe.Spec2Pipeline.flat_field - INFO - Step flat_field done
2022-12-03 23:10:03,070 - stpipe.Spec2Pipeline.pathloss - INFO - Step pathloss running with args (<MultiSlitModel from mos_g140m_line1_NRS2_uncal.fits>,).
2022-12-03 23:10:03,075 - stpipe.Spec2Pipeline.pathloss - INFO - Step pathloss parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'inverse': False, 'source_type': None}
2022-12-03 23:10:03,076 - stpipe.Spec2Pipeline.pathloss - INFO - Step skipped.
2022-12-03 23:10:03,079 - stpipe.Spec2Pipeline.pathloss - INFO - Step pathloss done
2022-12-03 23:10:03,843 - stpipe.Spec2Pipeline.barshadow - INFO - Step barshadow running with args (<MultiSlitModel from mos_g140m_line1_NRS2_uncal.fits>,).
2022-12-03 23:10:03,844 - stpipe.Spec2Pipeline.barshadow - INFO - Step barshadow parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'inverse': False, 'source_type': None}
2022-12-03 23:10:03,845 - stpipe.Spec2Pipeline.barshadow - INFO - Step skipped.
2022-12-03 23:10:03,847 - stpipe.Spec2Pipeline.barshadow - INFO - Step barshadow done
2022-12-03 23:10:04,593 - stpipe.Spec2Pipeline.photom - INFO - Step photom running with args (<MultiSlitModel from mos_g140m_line1_NRS2_uncal.fits>,).
2022-12-03 23:10:04,595 - stpipe.Spec2Pipeline.photom - INFO - Step photom parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'inverse': False, 'source_type': None}
2022-12-03 23:10:04,596 - stpipe.Spec2Pipeline.photom - INFO - Step skipped.
2022-12-03 23:10:04,600 - stpipe.Spec2Pipeline.photom - INFO - Step photom done
2022-12-03 23:10:05,455 - stpipe.Spec2Pipeline.resample_spec - INFO - Step resample_spec running with args (<MultiSlitModel from mos_g140m_line1_NRS2_cal.fits>,).
2022-12-03 23:10:05,458 - stpipe.Spec2Pipeline.resample_spec - INFO - Step resample_spec parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': 's2d', 'search_output_file': True, 'input_dir': '', 'pixfrac': 1.0, 'kernel': 'square', 'fillval': 'INDEF', 'weight_type': 'ivm', 'output_shape': None, 'crpix': None, 'crval': None, 'rotation': None, 'pixel_scale_ratio': 1.0, 'pixel_scale': None, 'single': False, 'blendheaders': True, 'allowed_memory': None, 'in_memory': True}
2022-12-03 23:10:05,459 - stpipe.Spec2Pipeline.resample_spec - INFO - Step skipped.
2022-12-03 23:10:05,461 - stpipe.Spec2Pipeline.resample_spec - INFO - Step resample_spec done
2022-12-03 23:10:06,150 - stpipe.Spec2Pipeline.extract_1d - INFO - Step extract_1d running with args (<MultiSlitModel from mos_g140m_line1_NRS2_cal.fits>,).
2022-12-03 23:10:06,152 - stpipe.Spec2Pipeline.extract_1d - INFO - Step extract_1d parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': 'x1d', 'search_output_file': True, 'input_dir': '', 'smoothing_length': None, 'bkg_fit': None, 'bkg_order': None, 'bkg_sigma_clip': 3.0, 'log_increment': 50, 'subtract_background': None, 'use_source_posn': None, 'center_xy': None, 'apply_apcorr': True, 'soss_threshold': 0.01, 'soss_n_os': 2, 'soss_transform': None, 'soss_tikfac': None, 'soss_width': 40.0, 'soss_bad_pix': 'model', 'soss_modelname': None}
2022-12-03 23:10:06,152 - stpipe.Spec2Pipeline.extract_1d - INFO - Step skipped.
2022-12-03 23:10:06,155 - stpipe.Spec2Pipeline.extract_1d - INFO - Step extract_1d done
2022-12-03 23:10:06,156 - stpipe.Spec2Pipeline - INFO - Finished processing product mos_g140m_line1_NRS2_uncal
2022-12-03 23:10:06,156 - stpipe.Spec2Pipeline - INFO - Ending calwebb_spec2
2022-12-03 23:10:06,156 - stpipe.Spec2Pipeline - INFO - Results used CRDS context: jwst_1019.pmap
2022-12-03 23:10:06,157 - stpipe.Spec2Pipeline - INFO - Step Spec2Pipeline done
Running flat field test for MOS... Filename: mos_g140m_line1_NRS2_interpolatedflat.fits No. Name Ver Type Cards Dimensions Format 0 PRIMARY 1 PrimaryHDU 268 () 1 SCI 1 ImageHDU 14 (1481, 23) float32 2 DQ 1 ImageHDU 11 (1481, 23) int32 (rescales to uint32) 3 ERR 1 ImageHDU 9 (1481, 23) float32 4 WAVELENGTH 1 ImageHDU 9 (1481, 23) float32 5 SCI 2 ImageHDU 14 (1481, 23) float32 6 DQ 2 ImageHDU 11 (1481, 23) int32 (rescales to uint32) 7 ERR 2 ImageHDU 9 (1481, 23) float32 8 WAVELENGTH 2 ImageHDU 9 (1481, 23) float32 9 SCI 3 ImageHDU 14 (1481, 23) float32 10 DQ 3 ImageHDU 11 (1481, 23) int32 (rescales to uint32) 11 ERR 3 ImageHDU 9 (1481, 23) float32 12 WAVELENGTH 3 ImageHDU 9 (1481, 23) float32 13 SCI 4 ImageHDU 14 (1481, 23) float32 14 DQ 4 ImageHDU 11 (1481, 23) int32 (rescales to uint32) 15 ERR 4 ImageHDU 9 (1481, 23) float32 16 WAVELENGTH 4 ImageHDU 9 (1481, 23) float32 17 SCI 5 ImageHDU 14 (1481, 23) float32 18 DQ 5 ImageHDU 11 (1481, 23) int32 (rescales to uint32) 19 ERR 5 ImageHDU 9 (1481, 23) float32 20 WAVELENGTH 5 ImageHDU 9 (1481, 23) float32 21 SCI 6 ImageHDU 14 (1481, 23) float32 22 DQ 6 ImageHDU 11 (1481, 23) int32 (rescales to uint32) 23 ERR 6 ImageHDU 9 (1481, 23) float32 24 WAVELENGTH 6 ImageHDU 9 (1481, 23) float32 25 SCI 7 ImageHDU 14 (1478, 21) float32 26 DQ 7 ImageHDU 11 (1478, 21) int32 (rescales to uint32) 27 ERR 7 ImageHDU 9 (1478, 21) float32 28 WAVELENGTH 7 ImageHDU 9 (1478, 21) float32 29 SCI 8 ImageHDU 14 (1482, 23) float32 30 DQ 8 ImageHDU 11 (1482, 23) int32 (rescales to uint32) 31 ERR 8 ImageHDU 9 (1482, 23) float32 32 WAVELENGTH 8 ImageHDU 9 (1482, 23) float32 33 SCI 9 ImageHDU 14 (1481, 23) float32 34 DQ 9 ImageHDU 11 (1481, 23) int32 (rescales to uint32) 35 ERR 9 ImageHDU 9 (1481, 23) float32 36 WAVELENGTH 9 ImageHDU 9 (1481, 23) float32 37 SCI 10 ImageHDU 14 (1482, 23) float32 38 DQ 10 ImageHDU 11 (1482, 23) int32 (rescales to uint32) 39 ERR 10 ImageHDU 9 (1482, 23) float32 40 WAVELENGTH 10 ImageHDU 9 (1482, 23) float32 41 SCI 11 ImageHDU 14 (1482, 23) float32 42 DQ 11 ImageHDU 11 (1482, 23) int32 (rescales to uint32) 43 ERR 11 ImageHDU 9 (1482, 23) float32 44 WAVELENGTH 11 ImageHDU 9 (1482, 23) float32 45 SCI 12 ImageHDU 14 (1478, 21) float32 46 DQ 12 ImageHDU 11 (1478, 21) int32 (rescales to uint32) 47 ERR 12 ImageHDU 9 (1478, 21) float32 48 WAVELENGTH 12 ImageHDU 9 (1478, 21) float32 49 SCI 13 ImageHDU 14 (1479, 21) float32 50 DQ 13 ImageHDU 11 (1479, 21) int32 (rescales to uint32) 51 ERR 13 ImageHDU 9 (1479, 21) float32 52 WAVELENGTH 13 ImageHDU 9 (1479, 21) float32 53 SCI 14 ImageHDU 14 (1477, 21) float32 54 DQ 14 ImageHDU 11 (1477, 21) int32 (rescales to uint32) 55 ERR 14 ImageHDU 9 (1477, 21) float32 56 WAVELENGTH 14 ImageHDU 9 (1477, 21) float32 57 SCI 15 ImageHDU 14 (1479, 21) float32 58 DQ 15 ImageHDU 11 (1479, 21) int32 (rescales to uint32) 59 ERR 15 ImageHDU 9 (1479, 21) float32 60 WAVELENGTH 15 ImageHDU 9 (1479, 21) float32 61 SCI 16 ImageHDU 14 (1476, 20) float32 62 DQ 16 ImageHDU 11 (1476, 20) int32 (rescales to uint32) 63 ERR 16 ImageHDU 9 (1476, 20) float32 64 WAVELENGTH 16 ImageHDU 9 (1476, 20) float32 65 SCI 17 ImageHDU 14 (1481, 21) float32 66 DQ 17 ImageHDU 11 (1481, 21) int32 (rescales to uint32) 67 ERR 17 ImageHDU 9 (1481, 21) float32 68 WAVELENGTH 17 ImageHDU 9 (1481, 21) float32 69 SCI 18 ImageHDU 14 (1464, 20) float32 70 DQ 18 ImageHDU 11 (1464, 20) int32 (rescales to uint32) 71 ERR 18 ImageHDU 9 (1464, 20) float32 72 WAVELENGTH 18 ImageHDU 9 (1464, 20) float32 73 SCI 19 ImageHDU 14 (1432, 19) float32 74 DQ 19 ImageHDU 11 (1432, 19) int32 (rescales to uint32) 75 ERR 19 ImageHDU 9 (1432, 19) float32 76 WAVELENGTH 19 ImageHDU 9 (1432, 19) float32 77 SCI 20 ImageHDU 14 (1418, 19) float32 78 DQ 20 ImageHDU 11 (1418, 19) int32 (rescales to uint32) 79 ERR 20 ImageHDU 9 (1418, 19) float32 80 WAVELENGTH 20 ImageHDU 9 (1418, 19) float32 81 SCI 21 ImageHDU 14 (1428, 21) float32 82 DQ 21 ImageHDU 11 (1428, 21) int32 (rescales to uint32) 83 ERR 21 ImageHDU 9 (1428, 21) float32 84 WAVELENGTH 21 ImageHDU 9 (1428, 21) float32 85 SCI 22 ImageHDU 14 (1412, 19) float32 86 DQ 22 ImageHDU 11 (1412, 19) int32 (rescales to uint32) 87 ERR 22 ImageHDU 9 (1412, 19) float32 88 WAVELENGTH 22 ImageHDU 9 (1412, 19) float32 89 SCI 23 ImageHDU 14 (1404, 19) float32 90 DQ 23 ImageHDU 11 (1404, 19) int32 (rescales to uint32) 91 ERR 23 ImageHDU 9 (1404, 19) float32 92 WAVELENGTH 23 ImageHDU 9 (1404, 19) float32 93 SCI 24 ImageHDU 14 (1385, 19) float32 94 DQ 24 ImageHDU 11 (1385, 19) int32 (rescales to uint32) 95 ERR 24 ImageHDU 9 (1385, 19) float32 96 WAVELENGTH 24 ImageHDU 9 (1385, 19) float32 97 SCI 25 ImageHDU 14 (1393, 19) float32 98 DQ 25 ImageHDU 11 (1393, 19) int32 (rescales to uint32) 99 ERR 25 ImageHDU 9 (1393, 19) float32 100 WAVELENGTH 25 ImageHDU 9 (1393, 19) float32 101 SCI 26 ImageHDU 14 (819, 13) float32 102 DQ 26 ImageHDU 11 (819, 13) int32 (rescales to uint32) 103 ERR 26 ImageHDU 9 (819, 13) float32 104 WAVELENGTH 26 ImageHDU 9 (819, 13) float32 105 SCI 27 ImageHDU 14 (819, 13) float32 106 DQ 27 ImageHDU 11 (819, 13) int32 (rescales to uint32) 107 ERR 27 ImageHDU 9 (819, 13) float32 108 WAVELENGTH 27 ImageHDU 9 (819, 13) float32 109 SCI 28 ImageHDU 14 (1473, 19) float32 110 DQ 28 ImageHDU 11 (1473, 19) int32 (rescales to uint32) 111 ERR 28 ImageHDU 9 (1473, 19) float32 112 WAVELENGTH 28 ImageHDU 9 (1473, 19) float32 113 SCI 29 ImageHDU 14 (1474, 19) float32 114 DQ 29 ImageHDU 11 (1474, 19) int32 (rescales to uint32) 115 ERR 29 ImageHDU 9 (1474, 19) float32 116 WAVELENGTH 29 ImageHDU 9 (1474, 19) float32 117 SCI 30 ImageHDU 14 (1473, 18) float32 118 DQ 30 ImageHDU 11 (1473, 18) int32 (rescales to uint32) 119 ERR 30 ImageHDU 9 (1473, 18) float32 120 WAVELENGTH 30 ImageHDU 9 (1473, 18) float32 121 SCI 31 ImageHDU 14 (1473, 18) float32 122 DQ 31 ImageHDU 11 (1473, 18) int32 (rescales to uint32) 123 ERR 31 ImageHDU 9 (1473, 18) float32 124 WAVELENGTH 31 ImageHDU 9 (1473, 18) float32 125 SCI 32 ImageHDU 14 (1474, 19) float32 126 DQ 32 ImageHDU 11 (1474, 19) int32 (rescales to uint32) 127 ERR 32 ImageHDU 9 (1474, 19) float32 128 WAVELENGTH 32 ImageHDU 9 (1474, 19) float32 129 SCI 33 ImageHDU 14 (1475, 19) float32 130 DQ 33 ImageHDU 11 (1475, 19) int32 (rescales to uint32) 131 ERR 33 ImageHDU 9 (1475, 19) float32 132 WAVELENGTH 33 ImageHDU 9 (1475, 19) float32 133 SCI 34 ImageHDU 14 (1473, 18) float32 134 DQ 34 ImageHDU 11 (1473, 18) int32 (rescales to uint32) 135 ERR 34 ImageHDU 9 (1473, 18) float32 136 WAVELENGTH 34 ImageHDU 9 (1473, 18) float32 137 SCI 35 ImageHDU 14 (1475, 19) float32 138 DQ 35 ImageHDU 11 (1475, 19) int32 (rescales to uint32) 139 ERR 35 ImageHDU 9 (1475, 19) float32 140 WAVELENGTH 35 ImageHDU 9 (1475, 19) float32 141 SCI 36 ImageHDU 14 (1474, 19) float32 142 DQ 36 ImageHDU 11 (1474, 19) int32 (rescales to uint32) 143 ERR 36 ImageHDU 9 (1474, 19) float32 144 WAVELENGTH 36 ImageHDU 9 (1474, 19) float32 145 SCI 37 ImageHDU 14 (1473, 17) float32 146 DQ 37 ImageHDU 11 (1473, 17) int32 (rescales to uint32) 147 ERR 37 ImageHDU 9 (1473, 17) float32 148 WAVELENGTH 37 ImageHDU 9 (1473, 17) float32 149 SCI 38 ImageHDU 14 (1476, 19) float32 150 DQ 38 ImageHDU 11 (1476, 19) int32 (rescales to uint32) 151 ERR 38 ImageHDU 9 (1476, 19) float32 152 WAVELENGTH 38 ImageHDU 9 (1476, 19) float32 153 SCI 39 ImageHDU 14 (1474, 18) float32 154 DQ 39 ImageHDU 11 (1474, 18) int32 (rescales to uint32) 155 ERR 39 ImageHDU 9 (1474, 18) float32 156 WAVELENGTH 39 ImageHDU 9 (1474, 18) float32 157 SCI 40 ImageHDU 14 (1457, 18) float32 158 DQ 40 ImageHDU 11 (1457, 18) int32 (rescales to uint32) 159 ERR 40 ImageHDU 9 (1457, 18) float32 160 WAVELENGTH 40 ImageHDU 9 (1457, 18) float32 161 SCI 41 ImageHDU 14 (1394, 17) float32 162 DQ 41 ImageHDU 11 (1394, 17) int32 (rescales to uint32) 163 ERR 41 ImageHDU 9 (1394, 17) float32 164 WAVELENGTH 41 ImageHDU 9 (1394, 17) float32 165 SCI 42 ImageHDU 14 (1377, 16) float32 166 DQ 42 ImageHDU 11 (1377, 16) int32 (rescales to uint32) 167 ERR 42 ImageHDU 9 (1377, 16) float32 168 WAVELENGTH 42 ImageHDU 9 (1377, 16) float32 169 SCI 43 ImageHDU 14 (1343, 16) float32 170 DQ 43 ImageHDU 11 (1343, 16) int32 (rescales to uint32) 171 ERR 43 ImageHDU 9 (1343, 16) float32 172 WAVELENGTH 43 ImageHDU 9 (1343, 16) float32 173 SCI 44 ImageHDU 14 (1296, 16) float32 174 DQ 44 ImageHDU 11 (1296, 16) int32 (rescales to uint32) 175 ERR 44 ImageHDU 9 (1296, 16) float32 176 WAVELENGTH 44 ImageHDU 9 (1296, 16) float32 177 SCI 45 ImageHDU 14 (1246, 15) float32 178 DQ 45 ImageHDU 11 (1246, 15) int32 (rescales to uint32) 179 ERR 45 ImageHDU 9 (1246, 15) float32 180 WAVELENGTH 45 ImageHDU 9 (1246, 15) float32 181 SCI 46 ImageHDU 14 (1246, 15) float32 182 DQ 46 ImageHDU 11 (1246, 15) int32 (rescales to uint32) 183 ERR 46 ImageHDU 9 (1246, 15) float32 184 WAVELENGTH 46 ImageHDU 9 (1246, 15) float32 185 SCI 47 ImageHDU 14 (1185, 15) float32 186 DQ 47 ImageHDU 11 (1185, 15) int32 (rescales to uint32) 187 ERR 47 ImageHDU 9 (1185, 15) float32 188 WAVELENGTH 47 ImageHDU 9 (1185, 15) float32 189 SCI 48 ImageHDU 14 (1158, 15) float32 190 DQ 48 ImageHDU 11 (1158, 15) int32 (rescales to uint32) 191 ERR 48 ImageHDU 9 (1158, 15) float32 192 WAVELENGTH 48 ImageHDU 9 (1158, 15) float32 193 SCI 49 ImageHDU 14 (1091, 14) float32 194 DQ 49 ImageHDU 11 (1091, 14) int32 (rescales to uint32) 195 ERR 49 ImageHDU 9 (1091, 14) float32 196 WAVELENGTH 49 ImageHDU 9 (1091, 14) float32 197 SCI 50 ImageHDU 14 (1091, 14) float32 198 DQ 50 ImageHDU 11 (1091, 14) int32 (rescales to uint32) 199 ERR 50 ImageHDU 9 (1091, 14) float32 200 WAVELENGTH 50 ImageHDU 9 (1091, 14) float32 201 SCI 51 ImageHDU 14 (1067, 14) float32 202 DQ 51 ImageHDU 11 (1067, 14) int32 (rescales to uint32) 203 ERR 51 ImageHDU 9 (1067, 14) float32 204 WAVELENGTH 51 ImageHDU 9 (1067, 14) float32 205 SCI 52 ImageHDU 14 (1048, 14) float32 206 DQ 52 ImageHDU 11 (1048, 14) int32 (rescales to uint32) 207 ERR 52 ImageHDU 9 (1048, 14) float32 208 WAVELENGTH 52 ImageHDU 9 (1048, 14) float32 209 SCI 53 ImageHDU 14 (1034, 14) float32 210 DQ 53 ImageHDU 11 (1034, 14) int32 (rescales to uint32) 211 ERR 53 ImageHDU 9 (1034, 14) float32 212 WAVELENGTH 53 ImageHDU 9 (1034, 14) float32 213 SCI 54 ImageHDU 14 (998, 14) float32 214 DQ 54 ImageHDU 11 (998, 14) int32 (rescales to uint32) 215 ERR 54 ImageHDU 9 (998, 14) float32 216 WAVELENGTH 54 ImageHDU 9 (998, 14) float32 217 SCI 55 ImageHDU 14 (297, 10) float32 218 DQ 55 ImageHDU 11 (297, 10) int32 (rescales to uint32) 219 ERR 55 ImageHDU 9 (297, 10) float32 220 WAVELENGTH 55 ImageHDU 9 (297, 10) float32 221 SCI 56 ImageHDU 14 (143, 9) float32 222 DQ 56 ImageHDU 11 (143, 9) int32 (rescales to uint32) 223 ERR 56 ImageHDU 9 (143, 9) float32 224 WAVELENGTH 56 ImageHDU 9 (143, 9) float32 225 SCI 57 ImageHDU 14 (74, 10) float32 226 DQ 57 ImageHDU 11 (74, 10) int32 (rescales to uint32) 227 ERR 57 ImageHDU 9 (74, 10) float32 228 WAVELENGTH 57 ImageHDU 9 (74, 10) float32 229 ASDF 1 BinTableHDU 11 1R x 1C [4794533B] flat_field_file --> Grating:G140M Filter:F100LP LAMP:LINE1 Using D-flat: /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/tmpc4g9b_04/nirspec_dflat_nrs2_f_01.03.fits Using S-flat: /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/tmpc4g9b_04/nirspec_MOS_sflat_G140M_OPAQUE_FLAT1_nrs2_f_01.01.fits Using F-flat: /internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/tmpc4g9b_04/nirspec_MOS_fflat_F100LP_01.01.fits Working with slit ID: 6 - which is 1 out of 57 Subwindow origin: px0=139 py0=1763 silt_id='6' quad=1 row=33 col=54 slitlet_id='33_54' Now looping through the pixels, this will take a while ...
/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/miniconda3/envs/jwst_validation_notebooks/lib/python3.9/site-packages/nirspec_pipe_testing_tool/calwebb_spec2_pytests/auxiliary_code/flattest_mos.py:534: RuntimeWarning: invalid value encountered in divide sff = int_tab/(last_sfv_wav - first_sfv_wav)
Calculating statistics...
Absolute Flat Difference : mean = -1.396e-06 median = -3.710e-07 stdev = 1.469e-04
Maximum AbsoluteFlat Difference = 1.046e-03
Minimum AbsoluteFlat Difference = -9.969e-04
Percentage of pixels where median of absolute differences is greater than:
-> 1xtheshold = 33%
-> 3xtheshold = 5%
-> 5xtheshold = 1%
Making histogram plot for this slitlet...
*** Result of the test: PASSED
Working with slit ID: 7 - which is 2 out of 57
Subwindow origin: px0=139 py0=1758
silt_id='7' quad=1 row=33 col=55 slitlet_id='33_55'
Now looping through the pixels, this will take a while ...
Calculating statistics...
Absolute Flat Difference : mean = 1.349e-07 median = -2.288e-07 stdev = 1.478e-04
Maximum AbsoluteFlat Difference = 1.201e-03
Minimum AbsoluteFlat Difference = -1.237e-03
Percentage of pixels where median of absolute differences is greater than:
-> 1xtheshold = 33%
-> 3xtheshold = 5%
-> 5xtheshold = 1%
Making histogram plot for this slitlet...
*** Result of the test: PASSED
Working with slit ID: 8 - which is 3 out of 57
Subwindow origin: px0=138 py0=1808
silt_id='8' quad=1 row=34 col=45 slitlet_id='34_45'
Now looping through the pixels, this will take a while ...
Calculating statistics...
Absolute Flat Difference : mean = -3.031e-07 median = 6.510e-07 stdev = 1.475e-04
Maximum AbsoluteFlat Difference = 1.182e-03
Minimum AbsoluteFlat Difference = -1.398e-03
Percentage of pixels where median of absolute differences is greater than:
-> 1xtheshold = 33%
-> 3xtheshold = 5%
-> 5xtheshold = 1%
Making histogram plot for this slitlet...
*** Result of the test: PASSED
Working with slit ID: 9 - which is 4 out of 57
Subwindow origin: px0=138 py0=1803
silt_id='9' quad=1 row=34 col=46 slitlet_id='34_46'
Now looping through the pixels, this will take a while ...
Calculating statistics...
Absolute Flat Difference : mean = 1.628e-07 median = 6.174e-07 stdev = 1.481e-04
Maximum AbsoluteFlat Difference = 1.071e-03
Minimum AbsoluteFlat Difference = -9.128e-04
Percentage of pixels where median of absolute differences is greater than:
-> 1xtheshold = 33%
-> 3xtheshold = 5%
-> 5xtheshold = 1%
Making histogram plot for this slitlet...
*** Result of the test: PASSED
Working with slit ID: 10 - which is 5 out of 57
Subwindow origin: px0=138 py0=1798
silt_id='10' quad=1 row=34 col=47 slitlet_id='34_47'
Now looping through the pixels, this will take a while ...
Calculating statistics...
Absolute Flat Difference : mean = -1.056e-06 median = -6.660e-07 stdev = 1.459e-04
Maximum AbsoluteFlat Difference = 1.046e-03
Minimum AbsoluteFlat Difference = -9.075e-04
Percentage of pixels where median of absolute differences is greater than:
-> 1xtheshold = 33%
-> 3xtheshold = 5%
-> 5xtheshold = 1%
Making histogram plot for this slitlet...
*** Result of the test: PASSED
Working with slit ID: 11 - which is 6 out of 57
Subwindow origin: px0=137 py0=1838
silt_id='11' quad=1 row=35 col=39 slitlet_id='35_39'
Now looping through the pixels, this will take a while ...
Calculating statistics...
Absolute Flat Difference : mean = -1.441e-06 median = -4.443e-07 stdev = 1.479e-04
Maximum AbsoluteFlat Difference = 1.227e-03
Minimum AbsoluteFlat Difference = -1.000e-03
Percentage of pixels where median of absolute differences is greater than:
-> 1xtheshold = 34%
-> 3xtheshold = 5%
-> 5xtheshold = 1%
Making histogram plot for this slitlet...
*** Result of the test: PASSED
Working with slit ID: 14 - which is 7 out of 57
Subwindow origin: px0=105 py0=1223
silt_id='14' quad=1 row=38 col=162 slitlet_id='38_162'
Now looping through the pixels, this will take a while ...
Calculating statistics...
Absolute Flat Difference : mean = 5.245e-08 median = -3.515e-08 stdev = 1.500e-04
Maximum AbsoluteFlat Difference = 1.051e-03
Minimum AbsoluteFlat Difference = -1.138e-03
Percentage of pixels where median of absolute differences is greater than:
-> 1xtheshold = 34%
-> 3xtheshold = 6%
-> 5xtheshold = 1%
Making histogram plot for this slitlet...
*** Result of the test: PASSED
Working with slit ID: 15 - which is 8 out of 57
Subwindow origin: px0=123 py0=1888
silt_id='15' quad=1 row=41 col=29 slitlet_id='41_29'
Now looping through the pixels, this will take a while ...
Calculating statistics...
Absolute Flat Difference : mean = -2.068e-06 median = -1.115e-06 stdev = 1.464e-04
Maximum AbsoluteFlat Difference = 1.016e-03
Minimum AbsoluteFlat Difference = -1.121e-03
Percentage of pixels where median of absolute differences is greater than:
-> 1xtheshold = 33%
-> 3xtheshold = 6%
-> 5xtheshold = 1%
Making histogram plot for this slitlet...
*** Result of the test: PASSED
Working with slit ID: 16 - which is 9 out of 57
Subwindow origin: px0=118 py0=1823
silt_id='16' quad=1 row=42 col=42 slitlet_id='42_42'
Now looping through the pixels, this will take a while ...
Calculating statistics...
Absolute Flat Difference : mean = 3.199e-07 median = -4.335e-07 stdev = 1.500e-04
Maximum AbsoluteFlat Difference = 1.063e-03
Minimum AbsoluteFlat Difference = -9.223e-04
Percentage of pixels where median of absolute differences is greater than:
-> 1xtheshold = 34%
-> 3xtheshold = 5%
-> 5xtheshold = 1%
Making histogram plot for this slitlet...
*** Result of the test: PASSED
Working with slit ID: 17 - which is 10 out of 57
Subwindow origin: px0=116 py0=1853
silt_id='17' quad=1 row=43 col=36 slitlet_id='43_36'
Now looping through the pixels, this will take a while ...
Calculating statistics...
Absolute Flat Difference : mean = 1.011e-06 median = 1.040e-07 stdev = 1.482e-04
Maximum AbsoluteFlat Difference = 1.123e-03
Minimum AbsoluteFlat Difference = -1.277e-03
Percentage of pixels where median of absolute differences is greater than:
-> 1xtheshold = 33%
-> 3xtheshold = 5%
-> 5xtheshold = 1%
Making histogram plot for this slitlet...
*** Result of the test: PASSED
Working with slit ID: 18 - which is 11 out of 57
Subwindow origin: px0=116 py0=1848
silt_id='18' quad=1 row=43 col=37 slitlet_id='43_37'
Now looping through the pixels, this will take a while ...
Calculating statistics...
Absolute Flat Difference : mean = 1.134e-06 median = 2.193e-07 stdev = 1.483e-04
Maximum AbsoluteFlat Difference = 9.964e-04
Minimum AbsoluteFlat Difference = -1.118e-03
Percentage of pixels where median of absolute differences is greater than:
-> 1xtheshold = 33%
-> 3xtheshold = 5%
-> 5xtheshold = 1%
Making histogram plot for this slitlet...
*** Result of the test: PASSED
Working with slit ID: 19 - which is 12 out of 57
Subwindow origin: px0=94 py0=1338
silt_id='19' quad=1 row=44 col=139 slitlet_id='44_139'
Now looping through the pixels, this will take a while ...
Calculating statistics...
Absolute Flat Difference : mean = 1.364e-07 median = -1.851e-06 stdev = 1.489e-04
Maximum AbsoluteFlat Difference = 1.079e-03
Minimum AbsoluteFlat Difference = -8.975e-04
Percentage of pixels where median of absolute differences is greater than:
-> 1xtheshold = 34%
-> 3xtheshold = 6%
-> 5xtheshold = 1%
Making histogram plot for this slitlet...
*** Result of the test: PASSED
Working with slit ID: 21 - which is 13 out of 57
Subwindow origin: px0=90 py0=1383
silt_id='21' quad=1 row=46 col=130 slitlet_id='46_130'
Now looping through the pixels, this will take a while ...
Calculating statistics...
Absolute Flat Difference : mean = 5.993e-07 median = 9.359e-08 stdev = 1.496e-04
Maximum AbsoluteFlat Difference = 1.142e-03
Minimum AbsoluteFlat Difference = -1.103e-03
Percentage of pixels where median of absolute differences is greater than:
-> 1xtheshold = 34%
-> 3xtheshold = 5%
-> 5xtheshold = 1%
Making histogram plot for this slitlet...
*** Result of the test: PASSED
Working with slit ID: 25 - which is 14 out of 57
Subwindow origin: px0=71 py0=1278
silt_id='25' quad=1 row=52 col=151 slitlet_id='52_151'
Now looping through the pixels, this will take a while ...
Calculating statistics...
Absolute Flat Difference : mean = -1.384e-06 median = -4.846e-07 stdev = 1.499e-04
Maximum AbsoluteFlat Difference = 1.215e-03
Minimum AbsoluteFlat Difference = -1.039e-03
Percentage of pixels where median of absolute differences is greater than:
-> 1xtheshold = 34%
-> 3xtheshold = 5%
-> 5xtheshold = 1%
Making histogram plot for this slitlet...
*** Result of the test: PASSED
Working with slit ID: 26 - which is 15 out of 57
Subwindow origin: px0=66 py0=1564
silt_id='26' quad=1 row=58 col=94 slitlet_id='58_94'
Now looping through the pixels, this will take a while ...
Calculating statistics...
Absolute Flat Difference : mean = -7.651e-07 median = -8.141e-07 stdev = 1.462e-04
Maximum AbsoluteFlat Difference = 9.464e-04
Minimum AbsoluteFlat Difference = -8.849e-04
Percentage of pixels where median of absolute differences is greater than:
-> 1xtheshold = 34%
-> 3xtheshold = 5%
-> 5xtheshold = 1%
Making histogram plot for this slitlet...
*** Result of the test: PASSED
Working with slit ID: 27 - which is 16 out of 57
Subwindow origin: px0=32 py0=1203
silt_id='27' quad=1 row=66 col=166 slitlet_id='66_166'
Now looping through the pixels, this will take a while ...
Calculating statistics...
Absolute Flat Difference : mean = 4.565e-07 median = 2.323e-07 stdev = 1.466e-04
Maximum AbsoluteFlat Difference = 8.939e-04
Minimum AbsoluteFlat Difference = -1.136e-03
Percentage of pixels where median of absolute differences is greater than:
-> 1xtheshold = 33%
-> 3xtheshold = 5%
-> 5xtheshold = 1%
Making histogram plot for this slitlet...
*** Result of the test: PASSED
Working with slit ID: 29 - which is 17 out of 57
Subwindow origin: px0=23 py0=1869
silt_id='29' quad=1 row=79 col=33 slitlet_id='79_33'
Now looping through the pixels, this will take a while ...
Calculating statistics...
Absolute Flat Difference : mean = 6.465e-07 median = -2.720e-07 stdev = 1.486e-04
Maximum AbsoluteFlat Difference = 1.243e-03
Minimum AbsoluteFlat Difference = -1.025e-03
Percentage of pixels where median of absolute differences is greater than:
-> 1xtheshold = 34%
-> 3xtheshold = 6%
-> 5xtheshold = 1%
Making histogram plot for this slitlet...
*** Result of the test: PASSED
Working with slit ID: 31 - which is 18 out of 57
Subwindow origin: px0=1 py0=1369
silt_id='31' quad=1 row=85 col=133 slitlet_id='85_133'
Now looping through the pixels, this will take a while ...
Calculating statistics...
Absolute Flat Difference : mean = -1.596e-06 median = -7.926e-07 stdev = 1.502e-04
Maximum AbsoluteFlat Difference = 1.223e-03
Minimum AbsoluteFlat Difference = -1.336e-03
Percentage of pixels where median of absolute differences is greater than:
-> 1xtheshold = 33%
-> 3xtheshold = 5%
-> 5xtheshold = 1%
Making histogram plot for this slitlet...
*** Result of the test: PASSED
Working with slit ID: 32 - which is 19 out of 57
Subwindow origin: px0=1 py0=1354
silt_id='32' quad=1 row=97 col=136 slitlet_id='97_136'
Now looping through the pixels, this will take a while ...
Calculating statistics...
Absolute Flat Difference : mean = -9.689e-07 median = -1.629e-07 stdev = 1.527e-04
Maximum AbsoluteFlat Difference = 1.041e-03
Minimum AbsoluteFlat Difference = -1.045e-03
Percentage of pixels where median of absolute differences is greater than:
-> 1xtheshold = 35%
-> 3xtheshold = 6%
-> 5xtheshold = 1%
Making histogram plot for this slitlet...
*** Result of the test: PASSED
Working with slit ID: 33 - which is 20 out of 57
Subwindow origin: px0=1 py0=1274
silt_id='33' quad=1 row=101 col=152 slitlet_id='101_152'
Now looping through the pixels, this will take a while ...
Calculating statistics...
Absolute Flat Difference : mean = 1.192e-06 median = -4.421e-07 stdev = 1.469e-04
Maximum AbsoluteFlat Difference = 1.200e-03
Minimum AbsoluteFlat Difference = -9.525e-04
Percentage of pixels where median of absolute differences is greater than:
-> 1xtheshold = 34%
-> 3xtheshold = 5%
-> 5xtheshold = 1%
Making histogram plot for this slitlet...
*** Result of the test: PASSED
Working with slit ID: 35 - which is 21 out of 57
Subwindow origin: px0=1 py0=1724
silt_id='35' quad=1 row=105 col=62 slitlet_id='105_62'
Now looping through the pixels, this will take a while ...
Calculating statistics...
Absolute Flat Difference : mean = 8.254e-07 median = 1.043e-06 stdev = 1.482e-04
Maximum AbsoluteFlat Difference = 9.801e-04
Minimum AbsoluteFlat Difference = -1.112e-03
Percentage of pixels where median of absolute differences is greater than:
-> 1xtheshold = 34%
-> 3xtheshold = 6%
-> 5xtheshold = 1%
Making histogram plot for this slitlet...
*** Result of the test: PASSED
Working with slit ID: 37 - which is 22 out of 57
Subwindow origin: px0=1 py0=1665
silt_id='37' quad=1 row=110 col=74 slitlet_id='110_74'
Now looping through the pixels, this will take a while ...
Calculating statistics...
Absolute Flat Difference : mean = -1.112e-06 median = -1.806e-06 stdev = 1.449e-04
Maximum AbsoluteFlat Difference = 1.144e-03
Minimum AbsoluteFlat Difference = -1.080e-03
Percentage of pixels where median of absolute differences is greater than:
-> 1xtheshold = 33%
-> 3xtheshold = 5%
-> 5xtheshold = 1%
Making histogram plot for this slitlet...
*** Result of the test: PASSED
Working with slit ID: 38 - which is 23 out of 57
Subwindow origin: px0=1 py0=1605
silt_id='38' quad=1 row=112 col=86 slitlet_id='112_86'
Now looping through the pixels, this will take a while ...
Calculating statistics...
Absolute Flat Difference : mean = -1.437e-07 median = -5.025e-07 stdev = 1.462e-04
Maximum AbsoluteFlat Difference = 1.370e-03
Minimum AbsoluteFlat Difference = -1.258e-03
Percentage of pixels where median of absolute differences is greater than:
-> 1xtheshold = 33%
-> 3xtheshold = 5%
-> 5xtheshold = 1%
Making histogram plot for this slitlet...
*** Result of the test: PASSED
Working with slit ID: 39 - which is 24 out of 57
Subwindow origin: px0=1 py0=1244
silt_id='39' quad=1 row=113 col=158 slitlet_id='113_158'
Now looping through the pixels, this will take a while ...
Calculating statistics...
Absolute Flat Difference : mean = 7.993e-07 median = 5.384e-07 stdev = 1.484e-04
Maximum AbsoluteFlat Difference = 1.172e-03
Minimum AbsoluteFlat Difference = -1.266e-03
Percentage of pixels where median of absolute differences is greater than:
-> 1xtheshold = 34%
-> 3xtheshold = 5%
-> 5xtheshold = 1%
Making histogram plot for this slitlet...
*** Result of the test: PASSED
Working with slit ID: 41 - which is 25 out of 57
Subwindow origin: px0=1 py0=1770
silt_id='41' quad=1 row=119 col=53 slitlet_id='119_53'
Now looping through the pixels, this will take a while ...
Calculating statistics...
Absolute Flat Difference : mean = 7.430e-07 median = 3.854e-08 stdev = 1.418e-04
Maximum AbsoluteFlat Difference = 1.066e-03
Minimum AbsoluteFlat Difference = -1.040e-03
Percentage of pixels where median of absolute differences is greater than:
-> 1xtheshold = 33%
-> 3xtheshold = 5%
-> 5xtheshold = 1%
Making histogram plot for this slitlet...
*** Result of the test: PASSED
Working with slit ID: 53 - which is 26 out of 57
Subwindow origin: px0=1 py0=1317
silt_id='53' quad=1 row=330 col=144 slitlet_id='330_144'
Now looping through the pixels, this will take a while ...
Calculating statistics...
Absolute Flat Difference : mean = 9.823e-07 median = 6.941e-07 stdev = 9.549e-05
Maximum AbsoluteFlat Difference = 4.570e-04
Minimum AbsoluteFlat Difference = -4.506e-04
Percentage of pixels where median of absolute differences is greater than:
-> 1xtheshold = 23%
-> 3xtheshold = 1%
-> 5xtheshold = 0%
Making histogram plot for this slitlet...
*** Result of the test: PASSED
Working with slit ID: 54 - which is 27 out of 57
Subwindow origin: px0=1 py0=1307
silt_id='54' quad=1 row=330 col=146 slitlet_id='330_146'
Now looping through the pixels, this will take a while ...
Calculating statistics...
Absolute Flat Difference : mean = 5.076e-07 median = 8.933e-09 stdev = 9.322e-05
Maximum AbsoluteFlat Difference = 5.143e-04
Minimum AbsoluteFlat Difference = -4.542e-04
Percentage of pixels where median of absolute differences is greater than:
-> 1xtheshold = 22%
-> 3xtheshold = 1%
-> 5xtheshold = 0%
Making histogram plot for this slitlet...
*** Result of the test: PASSED
Working with slit ID: 1 - which is 28 out of 57
Subwindow origin: px0=119 py0=35
silt_id='1' quad=2 row=20 col=157 slitlet_id='20_157'
Now looping through the pixels, this will take a while ...
Calculating statistics...
Absolute Flat Difference : mean = -5.151e-07 median = -3.732e-07 stdev = 1.399e-04
Maximum AbsoluteFlat Difference = 1.027e-03
Minimum AbsoluteFlat Difference = -8.946e-04
Percentage of pixels where median of absolute differences is greater than:
-> 1xtheshold = 33%
-> 3xtheshold = 5%
-> 5xtheshold = 1%
Making histogram plot for this slitlet...
*** Result of the test: PASSED
Working with slit ID: 2 - which is 29 out of 57
Subwindow origin: px0=125 py0=333
silt_id='2' quad=2 row=21 col=98 slitlet_id='21_98'
Now looping through the pixels, this will take a while ...
Calculating statistics...
Absolute Flat Difference : mean = 1.028e-06 median = 4.939e-07 stdev = 1.397e-04
Maximum AbsoluteFlat Difference = 8.418e-04
Minimum AbsoluteFlat Difference = -9.415e-04
Percentage of pixels where median of absolute differences is greater than:
-> 1xtheshold = 32%
-> 3xtheshold = 5%
-> 5xtheshold = 1%
Making histogram plot for this slitlet...
*** Result of the test: PASSED
Working with slit ID: 3 - which is 30 out of 57
Subwindow origin: px0=117 py0=56
silt_id='3' quad=2 row=21 col=153 slitlet_id='21_153'
Now looping through the pixels, this will take a while ...
Calculating statistics...
Absolute Flat Difference : mean = -2.858e-06 median = -1.311e-06 stdev = 1.396e-04
Maximum AbsoluteFlat Difference = 9.966e-04
Minimum AbsoluteFlat Difference = -1.092e-03
Percentage of pixels where median of absolute differences is greater than:
-> 1xtheshold = 33%
-> 3xtheshold = 5%
-> 5xtheshold = 1%
Making histogram plot for this slitlet...
*** Result of the test: PASSED
Working with slit ID: 4 - which is 31 out of 57
Subwindow origin: px0=112 py0=162
silt_id='4' quad=2 row=24 col=132 slitlet_id='24_132'
Now looping through the pixels, this will take a while ...
Calculating statistics...
Absolute Flat Difference : mean = -3.015e-06 median = -7.498e-07 stdev = 1.384e-04
Maximum AbsoluteFlat Difference = 8.806e-04
Minimum AbsoluteFlat Difference = -1.086e-03
Percentage of pixels where median of absolute differences is greater than:
-> 1xtheshold = 32%
-> 3xtheshold = 5%
-> 5xtheshold = 1%
Making histogram plot for this slitlet...
*** Result of the test: PASSED
Working with slit ID: 5 - which is 32 out of 57
Subwindow origin: px0=100 py0=308
silt_id='5' quad=2 row=30 col=103 slitlet_id='30_103'
Now looping through the pixels, this will take a while ...
Calculating statistics...
Absolute Flat Difference : mean = 1.271e-06 median = 1.161e-06 stdev = 1.402e-04
Maximum AbsoluteFlat Difference = 9.215e-04
Minimum AbsoluteFlat Difference = -9.819e-04
Percentage of pixels where median of absolute differences is greater than:
-> 1xtheshold = 32%
-> 3xtheshold = 5%
-> 5xtheshold = 1%
Making histogram plot for this slitlet...
*** Result of the test: PASSED
Working with slit ID: 12 - which is 33 out of 57
Subwindow origin: px0=92 py0=485
silt_id='12' quad=2 row=35 col=68 slitlet_id='35_68'
Now looping through the pixels, this will take a while ...
Calculating statistics...
Absolute Flat Difference : mean = -1.348e-06 median = -8.425e-07 stdev = 1.407e-04
Maximum AbsoluteFlat Difference = 1.206e-03
Minimum AbsoluteFlat Difference = -1.206e-03
Percentage of pixels where median of absolute differences is greater than:
-> 1xtheshold = 32%
-> 3xtheshold = 5%
-> 5xtheshold = 1%
Making histogram plot for this slitlet...
*** Result of the test: PASSED
Working with slit ID: 13 - which is 34 out of 57
Subwindow origin: px0=81 py0=96
silt_id='13' quad=2 row=35 col=145 slitlet_id='35_145'
Now looping through the pixels, this will take a while ...
Calculating statistics...
Absolute Flat Difference : mean = 7.384e-07 median = 5.599e-07 stdev = 1.453e-04
Maximum AbsoluteFlat Difference = 9.288e-04
Minimum AbsoluteFlat Difference = -1.076e-03
Percentage of pixels where median of absolute differences is greater than:
-> 1xtheshold = 33%
-> 3xtheshold = 5%
-> 5xtheshold = 1%
Making histogram plot for this slitlet...
*** Result of the test: PASSED
Working with slit ID: 20 - which is 35 out of 57
Subwindow origin: px0=77 py0=752
silt_id='20' quad=2 row=44 col=15 slitlet_id='44_15'
Now looping through the pixels, this will take a while ...
Calculating statistics...
Absolute Flat Difference : mean = 9.968e-07 median = 2.869e-07 stdev = 1.435e-04
Maximum AbsoluteFlat Difference = 9.678e-04
Minimum AbsoluteFlat Difference = -9.585e-04
Percentage of pixels where median of absolute differences is greater than:
-> 1xtheshold = 33%
-> 3xtheshold = 5%
-> 5xtheshold = 1%
Making histogram plot for this slitlet...
*** Result of the test: PASSED
Working with slit ID: 22 - which is 36 out of 57
Subwindow origin: px0=69 py0=646
silt_id='22' quad=2 row=46 col=36 slitlet_id='46_36'
Now looping through the pixels, this will take a while ...
Calculating statistics...
Absolute Flat Difference : mean = 1.200e-06 median = 3.090e-07 stdev = 1.422e-04
Maximum AbsoluteFlat Difference = 1.020e-03
Minimum AbsoluteFlat Difference = -1.018e-03
Percentage of pixels where median of absolute differences is greater than:
-> 1xtheshold = 33%
-> 3xtheshold = 5%
-> 5xtheshold = 1%
Making histogram plot for this slitlet...
*** Result of the test: PASSED
Working with slit ID: 23 - which is 37 out of 57
Subwindow origin: px0=53 py0=117
silt_id='23' quad=2 row=46 col=141 slitlet_id='46_141'
Now looping through the pixels, this will take a while ...
Calculating statistics...
Absolute Flat Difference : mean = 3.146e-08 median = 4.866e-07 stdev = 1.391e-04
Maximum AbsoluteFlat Difference = 1.057e-03
Minimum AbsoluteFlat Difference = -1.017e-03
Percentage of pixels where median of absolute differences is greater than:
-> 1xtheshold = 33%
-> 3xtheshold = 4%
-> 5xtheshold = 1%
Making histogram plot for this slitlet...
*** Result of the test: PASSED
Working with slit ID: 24 - which is 38 out of 57
Subwindow origin: px0=70 py0=787
silt_id='24' quad=2 row=47 col=8 slitlet_id='47_8'
Now looping through the pixels, this will take a while ...
Calculating statistics...
Absolute Flat Difference : mean = -6.647e-07 median = -9.258e-07 stdev = 1.413e-04
Maximum AbsoluteFlat Difference = 9.936e-04
Minimum AbsoluteFlat Difference = -1.139e-03
Percentage of pixels where median of absolute differences is greater than:
-> 1xtheshold = 32%
-> 3xtheshold = 5%
-> 5xtheshold = 1%
Making histogram plot for this slitlet...
*** Result of the test: PASSED
Working with slit ID: 28 - which is 39 out of 57
Subwindow origin: px0=12 py0=662
silt_id='28' quad=2 row=68 col=33 slitlet_id='68_33'
Now looping through the pixels, this will take a while ...
Calculating statistics...
Absolute Flat Difference : mean = 1.150e-06 median = 1.980e-06 stdev = 1.432e-04
Maximum AbsoluteFlat Difference = 9.711e-04
Minimum AbsoluteFlat Difference = -1.051e-03
Percentage of pixels where median of absolute differences is greater than:
-> 1xtheshold = 33%
-> 3xtheshold = 5%
-> 5xtheshold = 1%
Making histogram plot for this slitlet...
*** Result of the test: PASSED
Working with slit ID: 30 - which is 40 out of 57
Subwindow origin: px0=1 py0=702
silt_id='30' quad=2 row=79 col=25 slitlet_id='79_25'
Now looping through the pixels, this will take a while ...
Calculating statistics...
Absolute Flat Difference : mean = -9.318e-07 median = 3.888e-07 stdev = 1.426e-04
Maximum AbsoluteFlat Difference = 1.182e-03
Minimum AbsoluteFlat Difference = -1.043e-03
Percentage of pixels where median of absolute differences is greater than:
-> 1xtheshold = 33%
-> 3xtheshold = 5%
-> 5xtheshold = 1%
Making histogram plot for this slitlet...
*** Result of the test: PASSED
Working with slit ID: 34 - which is 41 out of 57
Subwindow origin: px0=1 py0=718
silt_id='34' quad=2 row=103 col=22 slitlet_id='103_22'
Now looping through the pixels, this will take a while ...
Calculating statistics...
Absolute Flat Difference : mean = -1.577e-06 median = -8.356e-07 stdev = 1.419e-04
Maximum AbsoluteFlat Difference = 1.127e-03
Minimum AbsoluteFlat Difference = -1.185e-03
Percentage of pixels where median of absolute differences is greater than:
-> 1xtheshold = 33%
-> 3xtheshold = 5%
-> 5xtheshold = 1%
Making histogram plot for this slitlet...
*** Result of the test: PASSED
Working with slit ID: 36 - which is 42 out of 57
Subwindow origin: px0=1 py0=451
silt_id='36' quad=2 row=106 col=75 slitlet_id='106_75'
Now looping through the pixels, this will take a while ...
Calculating statistics...
Absolute Flat Difference : mean = -7.989e-07 median = -9.023e-07 stdev = 1.324e-04
Maximum AbsoluteFlat Difference = 7.632e-04
Minimum AbsoluteFlat Difference = -9.772e-04
Percentage of pixels where median of absolute differences is greater than:
-> 1xtheshold = 31%
-> 3xtheshold = 4%
-> 5xtheshold = 1%
Making histogram plot for this slitlet...
*** Result of the test: PASSED
Working with slit ID: 40 - which is 43 out of 57
Subwindow origin: px0=1 py0=219
silt_id='40' quad=2 row=116 col=121 slitlet_id='116_121'
Now looping through the pixels, this will take a while ...
Calculating statistics...
Absolute Flat Difference : mean = -5.646e-07 median = -1.919e-06 stdev = 1.316e-04
Maximum AbsoluteFlat Difference = 9.625e-04
Minimum AbsoluteFlat Difference = -7.701e-04
Percentage of pixels where median of absolute differences is greater than:
-> 1xtheshold = 31%
-> 3xtheshold = 4%
-> 5xtheshold = 1%
Making histogram plot for this slitlet...
*** Result of the test: PASSED
Working with slit ID: 42 - which is 44 out of 57
Subwindow origin: px0=1 py0=547
silt_id='42' quad=2 row=138 col=56 slitlet_id='138_56'
Now looping through the pixels, this will take a while ...
Calculating statistics...
Absolute Flat Difference : mean = 1.790e-06 median = -5.405e-07 stdev = 1.251e-04
Maximum AbsoluteFlat Difference = 1.066e-03
Minimum AbsoluteFlat Difference = -8.083e-04
Percentage of pixels where median of absolute differences is greater than:
-> 1xtheshold = 30%
-> 3xtheshold = 4%
-> 5xtheshold = 1%
Making histogram plot for this slitlet...
*** Result of the test: PASSED
Working with slit ID: 43 - which is 45 out of 57
Subwindow origin: px0=1 py0=416
silt_id='43' quad=2 row=155 col=82 slitlet_id='155_82'
Now looping through the pixels, this will take a while ...
Calculating statistics...
Absolute Flat Difference : mean = -1.763e-07 median = 5.214e-07 stdev = 1.168e-04
Maximum AbsoluteFlat Difference = 6.433e-04
Minimum AbsoluteFlat Difference = -7.721e-04
Percentage of pixels where median of absolute differences is greater than:
-> 1xtheshold = 29%
-> 3xtheshold = 3%
-> 5xtheshold = 0%
Making histogram plot for this slitlet...
*** Result of the test: PASSED
Working with slit ID: 44 - which is 46 out of 57
Subwindow origin: px0=1 py0=406
silt_id='44' quad=2 row=155 col=84 slitlet_id='155_84'
Now looping through the pixels, this will take a while ...
Calculating statistics...
Absolute Flat Difference : mean = -8.484e-07 median = -4.196e-07 stdev = 1.167e-04
Maximum AbsoluteFlat Difference = 8.535e-04
Minimum AbsoluteFlat Difference = -8.189e-04
Percentage of pixels where median of absolute differences is greater than:
-> 1xtheshold = 29%
-> 3xtheshold = 3%
-> 5xtheshold = 0%
Making histogram plot for this slitlet...
*** Result of the test: PASSED
Working with slit ID: 45 - which is 47 out of 57
Subwindow origin: px0=1 py0=532
silt_id='45' quad=2 row=180 col=59 slitlet_id='180_59'
Now looping through the pixels, this will take a while ...
Calculating statistics...
Absolute Flat Difference : mean = -3.261e-07 median = -8.783e-07 stdev = 1.124e-04
Maximum AbsoluteFlat Difference = 7.788e-04
Minimum AbsoluteFlat Difference = -8.520e-04
Percentage of pixels where median of absolute differences is greater than:
-> 1xtheshold = 28%
-> 3xtheshold = 2%
-> 5xtheshold = 0%
Making histogram plot for this slitlet...
*** Result of the test: PASSED
Working with slit ID: 46 - which is 48 out of 57
Subwindow origin: px0=1 py0=204
silt_id='46' quad=2 row=186 col=124 slitlet_id='186_124'
Now looping through the pixels, this will take a while ...
Calculating statistics...
Absolute Flat Difference : mean = -1.764e-07 median = 3.732e-07 stdev = 1.089e-04
Maximum AbsoluteFlat Difference = 8.721e-04
Minimum AbsoluteFlat Difference = -7.646e-04
Percentage of pixels where median of absolute differences is greater than:
-> 1xtheshold = 27%
-> 3xtheshold = 2%
-> 5xtheshold = 0%
Making histogram plot for this slitlet...
*** Result of the test: PASSED
Working with slit ID: 47 - which is 49 out of 57
Subwindow origin: px0=1 py0=568
silt_id='47' quad=2 row=216 col=52 slitlet_id='216_52'
Now looping through the pixels, this will take a while ...
Calculating statistics...
Absolute Flat Difference : mean = -1.171e-06 median = -8.150e-07 stdev = 1.049e-04
Maximum AbsoluteFlat Difference = 5.653e-04
Minimum AbsoluteFlat Difference = -6.140e-04
Percentage of pixels where median of absolute differences is greater than:
-> 1xtheshold = 27%
-> 3xtheshold = 2%
-> 5xtheshold = 0%
Making histogram plot for this slitlet...
*** Result of the test: PASSED
Working with slit ID: 48 - which is 50 out of 57
Subwindow origin: px0=1 py0=563
silt_id='48' quad=2 row=216 col=53 slitlet_id='216_53'
Now looping through the pixels, this will take a while ...
Calculating statistics...
Absolute Flat Difference : mean = 3.496e-07 median = -1.087e-08 stdev = 1.044e-04
Maximum AbsoluteFlat Difference = 5.858e-04
Minimum AbsoluteFlat Difference = -4.755e-04
Percentage of pixels where median of absolute differences is greater than:
-> 1xtheshold = 25%
-> 3xtheshold = 2%
-> 5xtheshold = 0%
Making histogram plot for this slitlet...
*** Result of the test: PASSED
Working with slit ID: 49 - which is 51 out of 57
Subwindow origin: px0=1 py0=634
silt_id='49' quad=2 row=226 col=39 slitlet_id='226_39'
Now looping through the pixels, this will take a while ...
Calculating statistics...
Absolute Flat Difference : mean = 3.475e-08 median = -2.569e-07 stdev = 1.030e-04
Maximum AbsoluteFlat Difference = 4.734e-04
Minimum AbsoluteFlat Difference = -5.079e-04
Percentage of pixels where median of absolute differences is greater than:
-> 1xtheshold = 26%
-> 3xtheshold = 2%
-> 5xtheshold = 0%
Making histogram plot for this slitlet...
*** Result of the test: PASSED
Working with slit ID: 50 - which is 52 out of 57
Subwindow origin: px0=1 py0=240
silt_id='50' quad=2 row=228 col=117 slitlet_id='228_117'
Now looping through the pixels, this will take a while ...
Calculating statistics...
Absolute Flat Difference : mean = -9.486e-07 median = -3.623e-07 stdev = 1.043e-04
Maximum AbsoluteFlat Difference = 4.845e-04
Minimum AbsoluteFlat Difference = -5.073e-04
Percentage of pixels where median of absolute differences is greater than:
-> 1xtheshold = 26%
-> 3xtheshold = 2%
-> 5xtheshold = 0%
Making histogram plot for this slitlet...
*** Result of the test: PASSED
Working with slit ID: 51 - which is 53 out of 57
Subwindow origin: px0=1 py0=432
silt_id='51' quad=2 row=236 col=79 slitlet_id='236_79'
Now looping through the pixels, this will take a while ...
Calculating statistics...
Absolute Flat Difference : mean = -3.418e-07 median = -1.184e-06 stdev = 1.043e-04
Maximum AbsoluteFlat Difference = 5.441e-04
Minimum AbsoluteFlat Difference = -5.593e-04
Percentage of pixels where median of absolute differences is greater than:
-> 1xtheshold = 26%
-> 3xtheshold = 2%
-> 5xtheshold = 0%
Making histogram plot for this slitlet...
*** Result of the test: PASSED
Working with slit ID: 52 - which is 54 out of 57
Subwindow origin: px0=1 py0=805
silt_id='52' quad=2 row=255 col=5 slitlet_id='255_5'
Now looping through the pixels, this will take a while ...
Calculating statistics...
Absolute Flat Difference : mean = 1.272e-06 median = -1.060e-06 stdev = 1.023e-04
Maximum AbsoluteFlat Difference = 6.290e-04
Minimum AbsoluteFlat Difference = -6.241e-04
Percentage of pixels where median of absolute differences is greater than:
-> 1xtheshold = 25%
-> 3xtheshold = 1%
-> 5xtheshold = 0%
Making histogram plot for this slitlet...
*** Result of the test: PASSED
Working with slit ID: 55 - which is 55 out of 57
Subwindow origin: px0=1 py0=1417
silt_id='55' quad=3 row=82 col=124 slitlet_id='82_124'
Now looping through the pixels, this will take a while ...
Calculating statistics...
Absolute Flat Difference : mean = -1.054e-06 median = -1.019e-06 stdev = 6.410e-05
Maximum AbsoluteFlat Difference = 3.558e-04
Minimum AbsoluteFlat Difference = -2.853e-04
Percentage of pixels where median of absolute differences is greater than:
-> 1xtheshold = 10%
-> 3xtheshold = 0%
-> 5xtheshold = 0%
Making histogram plot for this slitlet...
*** Result of the test: PASSED
Working with slit ID: 56 - which is 56 out of 57
Subwindow origin: px0=1 py0=770
silt_id='56' quad=4 row=130 col=12 slitlet_id='130_12'
Now looping through the pixels, this will take a while ...
Calculating statistics...
Absolute Flat Difference : mean = -8.683e-07 median = -1.170e-06 stdev = 4.779e-05
Maximum AbsoluteFlat Difference = 1.652e-04
Minimum AbsoluteFlat Difference = -1.661e-04
Percentage of pixels where median of absolute differences is greater than:
-> 1xtheshold = 4%
-> 3xtheshold = 0%
-> 5xtheshold = 0%
Making histogram plot for this slitlet...
*** Result of the test: PASSED
Working with slit ID: 57 - which is 57 out of 57
Subwindow origin: px0=1 py0=356
silt_id='57' quad=4 row=150 col=94 slitlet_id='150_94'
Now looping through the pixels, this will take a while ...
Calculating statistics...
Absolute Flat Difference : mean = 1.147e-06 median = -1.376e-06 stdev = 4.284e-05
Maximum AbsoluteFlat Difference = 1.115e-04
Minimum AbsoluteFlat Difference = -1.287e-04
Percentage of pixels where median of absolute differences is greater than:
-> 1xtheshold = 2%
-> 3xtheshold = 0%
-> 5xtheshold = 0%
Making histogram plot for this slitlet...
*** Result of the test: PASSED
*** Final result for flat_field test will be reported as PASSED ***
('* Script flattest_mos.py took ', '7.372057759761811 minutes to finish.')
Did flat_field for mos_g140m_f100lp validation test passed? All slitlets PASSED flat_field test.
Closing file: popenfile(path='/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/tmpc4g9b_04/nirspec_dflat_nrs2_f_01.03.fits', fd=56, position=680480640, mode='r', flags=557056)
Closing file: popenfile(path='/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/tmpc4g9b_04/nirspec_MOS_sflat_G140M_OPAQUE_FLAT1_nrs2_f_01.01.fits', fd=57, position=1006715520, mode='r', flags=557056)
Closing file: popenfile(path='/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/tmpc4g9b_04/nirspec_MOS_fflat_F100LP_01.01.fits', fd=58, position=299989440, mode='r', flags=557056)
Closing file: popenfile(path='/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/tmpc4g9b_04/V8460001000101_msa.fits', fd=59, position=512640, mode='r', flags=557056)
Closing file: popenfile(path='/internal/data1/jenkins/workspace/Notebooks/jwst_validation_notebooks_spacetelescope/tmp/tmpc4g9b_04/mos_g140m_line1_NRS2_interpolatedflat.fits', fd=60, position=23440320, mode='r', flags=557056)
# Quickly see if the test passed
print('These are the final results of the tests: ')
for key, val in results_dict.items():
if not isinstance(val, str):
if val:
val = 'PASSED'
else:
val = 'FAILED'
print('{:<42} {:<8}'.format(key, val))
These are the final results of the tests: mos_g140m_line1_NRS1_uncal.fits FAILED mos_g140m_line1_NRS2_uncal.fits PASSED
Author: Maria A. Pena-Guerrero, Sr. Science Software Engineer, NIRSpec
Updated On: Sep/23/2022